# 2020/07/28 05:17:10
# HUMAN	Target (Host) organism
# DNA	Sequencing source
# ERR241090	Replication ID
# SRP000540	Sample ID
# ERR241090_1.filt	Read1
# ERR241090_2.filt	Read2
R1	        3863722 (100.0000%)	[A] Total raw reads
R1	        3795181 (98.2260%)	[B] Total reads after QC of (A)
R1		
R1	        3795181 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R1	        6995021 (92.1566%)	[B-3] Total mapped reads of (B-2)x2
R1	         595341 (7.8434%)	[B-4] Total unmapped reads of (B-2)x2
R1	        3515710 (92.6362%)	[F] Total mapped reads of (B-2)
R1	         279471 (7.3638%)	[G] Total unmapped reads of (B-2)
R1	          35167 (0.9266%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R1	        3760014 (99.0734%)	[J] Total mapped reads to host genome ( (B-2)-H)
R1	           9841 (0.2593%)	[I-1] Total mapped reads of (H) to exo. genomes
R1	      2617.278	[I-3] RPMH of (I-1)
R1	      2593.025	[I-4] PPM of (I-1)
R1	    279836.210	[I-5] RPMU of (I-1)
R1	             11 (0.0003%)	[I-6] Total chimeric reads of (I-1)
R1	         2.925	[I-7] RPMH of (I-6)
R1	         2.898	[I-8] PPM of (I-6)
R1	       312.793	[I-9] RPMU of (I-6)
R1		
## -----------------------------------------

R2	        3863722 (100.0000%)	[A] Total raw reads
R2	        3795181 (98.2260%)	[B] Total reads after QC of (A)
R2		
R2	        3795181 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R2	        6995021 (92.1566%)	[B-3] Total mapped reads of (B-2)x2
R2	         595341 (7.8434%)	[B-4] Total unmapped reads of (B-2)x2
R2	        3479311 (91.6771%)	[F] Total mapped reads of (B-2)
R2	         315870 (8.3229%)	[G] Total unmapped reads of (B-2)
R2	          50941 (1.3423%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R2	        3744240 (98.6577%)	[J] Total mapped reads to host genome ( (B-2)-H)
R2	           9706 (0.2557%)	[I-1] Total mapped reads of (H) to exo. genomes
R2	      2592.248	[I-3] RPMH of (I-1)
R2	      2557.454	[I-4] PPM of (I-1)
R2	    190534.147	[I-5] RPMU of (I-1)
R2	              5 (0.0001%)	[I-6] Total chimeric reads of (I-1)
R2	         1.335	[I-7] RPMH of (I-6)
R2	         1.317	[I-8] PPM of (I-6)
R2	        98.153	[I-9] RPMU of (I-6)
R2		
## -----------------------------------------

##=============================================##
# List threshold of RPMU   > 1
# List threshold of P-value < 0.001
# RPMH	PPM	RPMU	Total	Multi_Reads(All_ExoGenus)	Uniq_Reads(This_Genus)	wTotal	Sum_ReadLength	Type	Exo	Genus	Pvalue(Uniq)
2615.4158	2591.1808	279637.1598	9834	0	9834	9834.000	981600	ALL_R1	viral	Lymphocryptovirus	0.0
<<
2589.8447	2555.0824	190357.4724	9697	0	9697	9697.000	968201	ALL_R2	viral	Lymphocryptovirus	0.0
<<
2.9255	2.8984	312.7932	11	0	11	11.000	1096	R1U	viral	Lymphocryptovirus	n/a	
<<
1.3354	1.3175	98.1528	5	0	5	5.000	500	R2U	viral	Lymphocryptovirus	n/a