# 2018/01/19 12:48:47
# HUMAN	Target (Host) organism
# RNA	Sequencing source
# L-428_1	Replication ID
# L-428	Sample ID
# CVCL_1361_1	Read1
# CVCL_1361_2	Read2
R1	  75199596 (100.0000%)	[A] Total raw reads
R1	  69233147 (92.0658%)	[B] Total reads after QC of (A)
R1		
R1	  69233147 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R1	 131096139 (94.6773%)	[B-3] Total mapped reads of (B-2)x2
R1	   7370155 (5.3227%)	[B-4] Total unmapped reads of (B-2)x2
R1	  65632975 (94.7999%)	[F] Total mapped reads of (B-2)
R1	   3600172 (5.2001%)	[G] Total unmapped reads of (B-2)
R1	     75820 (0.1095%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R1	  69157327 (99.8905%)	[J] Total mapped reads to host genome ( (B-2)-H)
R1	      3614 (0.0052%)	[I-1] Total mapped reads of (H) to exo. genomes
R1	        52.258	[I-3] RPMH of (I-1)
R1	        52.200	[I-4] PPM of (I-1)
R1	        33 (0.0000%)	[I-5] Total chimeric reads of (I-1)
R1	         0.477	[I-7] RPMH of (I-5)
R1	         0.477	[I-8] PPM of (I-5)
R1		
## -----------------------------------------

R2	  75199596 (100.0000%)	[A] Total raw reads
R2	  69233147 (92.0658%)	[B] Total reads after QC of (A)
R2		
R2	  69233147 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R2	 131096139 (94.6773%)	[B-3] Total mapped reads of (B-2)x2
R2	   7370155 (5.3227%)	[B-4] Total unmapped reads of (B-2)x2
R2	  65463164 (94.5547%)	[F] Total mapped reads of (B-2)
R2	   3769983 (5.4453%)	[G] Total unmapped reads of (B-2)
R2	     88257 (0.1275%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R2	  69144890 (99.8725%)	[J] Total mapped reads to host genome ( (B-2)-H)
R2	      3668 (0.0053%)	[I-1] Total mapped reads of (H) to exo. genomes
R2	        53.048	[I-3] RPMH of (I-1)
R2	        52.980	[I-4] PPM of (I-1)
R2	        48 (0.0001%)	[I-5] Total chimeric reads of (I-1)
R2	         0.694	[I-7] RPMH of (I-5)
R2	         0.693	[I-8] PPM of (I-5)
R2		
## -----------------------------------------

##=============================================##
# List threshold of RPMH   > 1
# List threshold of P-value < 0.001
# RPMH	PPM	Total	Multi_Reads(All_ExoGenus)	Uniq_Reads(This_Genus)	wTotal	Sum_ReadLength	Type	Exo	Genus	Pvalue(Uniq)
6.0905	6.0838	756	549	207	421.203	73836	ALL_R1	bacteria	Pseudomonas	0.0
4.1033	4.0988	746	694	52	283.771	73174	ALL_R1	bacteria	Sphingomonas	0.0
2.7751	2.7720	413	317	96	191.917	40658	ALL_R1	bacteria	Streptococcus	0.0
2.5984	2.5955	401	288	113	179.696	39312	ALL_R1	bacteria	Cutibacterium	0.0
2.5864	2.5835	468	412	56	178.866	45691	ALL_R1	bacteria	Sphingobium	0.0
2.0617	2.0595	596	592	4	142.583	58401	ALL_R1	bacteria	Novosphingobium	4.00e-04
1.8307	1.8287	416	407	9	126.605	40787	ALL_R1	bacteria	Lactobacillus	1.20e-16
1.7530	1.7511	397	354	43	121.236	38959	ALL_R1	bacteria	Clostridium	1.10e-210
1.7484	1.7464	372	333	39	120.912	36627	ALL_R1	bacteria	Acinetobacter	5.86e-145
1.4672	1.4656	356	333	23	101.467	34795	ALL_R1	bacteria	Enterobacter	0.0
1.3412	1.3397	157	92	65	92.751	15184	ALL_R1	bacteria	Mucilaginibacter	0.0
1.3073	1.3059	353	347	6	90.412	34425	ALL_R1	bacteria	Escherichia	9.16e-18
1.1424	1.1412	317	300	17	79.008	31016	ALL_R1	bacteria	Agrobacterium	8.98e-69
1.1037	1.1025	299	268	31	76.331	29199	ALL_R1	bacteria	Neisseria	0.0
1.0877	1.0865	389	371	18	75.225	38114	ALL_R1	bacteria	Corynebacterium	2.03e-152
1.0266	1.0255	350	343	7	70.998	34319	ALL_R1	bacteria	Nakamurella	2.75e-12
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1.4355	1.4339	318	269	49	99.273	31393	ALL_R1	fungi	Malassezia	0.0
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1.2571	1.2557	88	9	79	86.937	8508	ALL_R1	viral	Gammaretrovirus	0.0
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6.1633	6.1555	748	536	212	426.164	72751	ALL_R2	bacteria	Pseudomonas	0.0
4.2510	4.2455	742	695	47	293.932	72416	ALL_R2	bacteria	Sphingomonas	0.0
2.7994	2.7959	493	438	55	193.567	48195	ALL_R2	bacteria	Sphingobium	0.0
2.6448	2.6414	413	324	89	182.872	40379	ALL_R2	bacteria	Streptococcus	0.0
2.6229	2.6196	371	244	127	181.362	36151	ALL_R2	bacteria	Cutibacterium	0.0
2.3226	2.3196	600	594	6	160.595	58672	ALL_R2	bacteria	Novosphingobium	2.29e-09
1.8032	1.8009	440	433	7	124.681	42998	ALL_R2	bacteria	Lactobacillus	1.43e-09
1.7914	1.7891	414	376	38	123.864	40609	ALL_R2	bacteria	Clostridium	3.64e-158
1.7783	1.7760	370	347	23	122.957	35972	ALL_R2	bacteria	Enterobacter	0.0
1.7611	1.7588	378	340	38	121.770	36828	ALL_R2	bacteria	Acinetobacter	2.46e-133
1.4086	1.4068	411	407	4	97.397	39824	ALL_R2	bacteria	Burkholderia	3.52e-05
1.2499	1.2483	152	131	21	86.423	14764	ALL_R2	bacteria	Mucilaginibacter	1.24e-61
1.2000	1.1985	388	376	12	82.974	37919	ALL_R2	bacteria	Corynebacterium	1.51e-61
1.1667	1.1652	294	268	26	80.669	28862	ALL_R2	bacteria	Agrobacterium	7.89e-160
1.1360	1.1346	316	288	28	78.549	30836	ALL_R2	bacteria	Neisseria	0.0
1.0046	1.0033	303	291	12	69.460	29624	ALL_R2	bacteria	Stenotrophomonas	3.83e-23
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1.2469	1.2454	317	276	41	86.220	31002	ALL_R2	fungi	Malassezia	0.0
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1.0763	1.0749	75	4	71	74.421	7180	ALL_R2	viral	Gammaretrovirus	0.0