# 2020/07/27 23:44:04
# HUMAN	Target (Host) organism
# DNA	Sequencing source
# ERR240742	Replication ID
# SRP000540	Sample ID
# ERR240742_1.filt	Read1
# ERR240742_2.filt	Read2
R1	        3637782 (100.0000%)	[A] Total raw reads
R1	        3570750 (98.1573%)	[B] Total reads after QC of (A)
R1		
R1	        3570750 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R1	        6580988 (92.1513%)	[B-3] Total mapped reads of (B-2)x2
R1	         560512 (7.8487%)	[B-4] Total unmapped reads of (B-2)x2
R1	        3308883 (92.6663%)	[F] Total mapped reads of (B-2)
R1	         261867 (7.3337%)	[G] Total unmapped reads of (B-2)
R1	          32557 (0.9118%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R1	        3538193 (99.0882%)	[J] Total mapped reads to host genome ( (B-2)-H)
R1	           9200 (0.2576%)	[I-1] Total mapped reads of (H) to exo. genomes
R1	      2600.197	[I-3] RPMH of (I-1)
R1	      2576.490	[I-4] PPM of (I-1)
R1	    282581.319	[I-5] RPMU of (I-1)
R1	             12 (0.0003%)	[I-6] Total chimeric reads of (I-1)
R1	         3.392	[I-7] RPMH of (I-6)
R1	         3.361	[I-8] PPM of (I-6)
R1	       368.584	[I-9] RPMU of (I-6)
R1		
## -----------------------------------------

R2	        3637782 (100.0000%)	[A] Total raw reads
R2	        3570750 (98.1573%)	[B] Total reads after QC of (A)
R2		
R2	        3570750 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R2	        6580988 (92.1513%)	[B-3] Total mapped reads of (B-2)x2
R2	         560512 (7.8487%)	[B-4] Total unmapped reads of (B-2)x2
R2	        3272105 (91.6364%)	[F] Total mapped reads of (B-2)
R2	         298645 (8.3636%)	[G] Total unmapped reads of (B-2)
R2	          47220 (1.3224%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R2	        3523530 (98.6776%)	[J] Total mapped reads to host genome ( (B-2)-H)
R2	           9141 (0.2560%)	[I-1] Total mapped reads of (H) to exo. genomes
R2	      2594.273	[I-3] RPMH of (I-1)
R2	      2559.966	[I-4] PPM of (I-1)
R2	    193583.227	[I-5] RPMU of (I-1)
R2	              9 (0.0003%)	[I-6] Total chimeric reads of (I-1)
R2	         2.554	[I-7] RPMH of (I-6)
R2	         2.520	[I-8] PPM of (I-6)
R2	       190.597	[I-9] RPMU of (I-6)
R2		
## -----------------------------------------

##=============================================##
# List threshold of RPMU   > 1
# List threshold of P-value < 0.001
# RPMH	PPM	RPMU	Total	Multi_Reads(All_ExoGenus)	Uniq_Reads(This_Genus)	wTotal	Sum_ReadLength	Type	Exo	Genus	Pvalue(Uniq)
2598.5016	2574.8092	282397.0268	9194	0	9194	9194.000	915340	ALL_R1	viral	Lymphocryptovirus	0.0
<<
2592.5705	2558.2861	193456.1626	9135	0	9135	9135.000	910145	ALL_R2	viral	Lymphocryptovirus	0.0
<<
3.3916	3.3606	368.5843	12	0	12	12.000	1195	R1U	viral	Lymphocryptovirus	n/a	
<<
2.5543	2.5205	190.5972	9	0	9	9.000	893	R2U	viral	Lymphocryptovirus	n/a