# 2020/07/26 20:48:34 # HUMAN Target (Host) organism # DNA Sequencing source # ERR006287 Replication ID # SRP000540 Sample ID # ERR006287_1.filt Read1 # ERR006287_2.filt Read2 R1 9943846 (100.0000%) [A] Total raw reads R1 1145946 (11.5242%) [B] Total reads after QC of (A) R1 R1 1145946 (100.0000%) [B-2] Total reads of (B) passed to HISAT2 R1 1796969 (78.4055%) [B-3] Total mapped reads of (B-2)x2 R1 494923 (21.5945%) [B-4] Total unmapped reads of (B-2)x2 R1 887432 (77.4410%) [F] Total mapped reads of (B-2) R1 258514 (22.5590%) [G] Total unmapped reads of (B-2) R1 82647 (7.2121%) [H] Total unmapped reads of (B-2) after running BLASTn with (G) R1 1063299 (92.7879%) [J] Total mapped reads to host genome ( (B-2)-H) R1 566 (0.0494%) [I-1] Total mapped reads of (H) to exo. genomes R1 532.306 [I-3] RPMH of (I-1) R1 493.915 [I-4] PPM of (I-1) R1 6848.404 [I-5] RPMU of (I-1) R1 37 (0.0032%) [I-6] Total chimeric reads of (I-1) R1 34.797 [I-7] RPMH of (I-6) R1 32.288 [I-8] PPM of (I-6) R1 447.687 [I-9] RPMU of (I-6) R1 ## ----------------------------------------- R2 9943846 (100.0000%) [A] Total raw reads R2 1145946 (11.5242%) [B] Total reads after QC of (A) R2 R2 1145946 (100.0000%) [B-2] Total reads of (B) passed to HISAT2 R2 1796969 (78.4055%) [B-3] Total mapped reads of (B-2)x2 R2 494923 (21.5945%) [B-4] Total unmapped reads of (B-2)x2 R2 909537 (79.3700%) [F] Total mapped reads of (B-2) R2 236409 (20.6300%) [G] Total unmapped reads of (B-2) R2 62186 (5.4266%) [H] Total unmapped reads of (B-2) after running BLASTn with (G) R2 1083760 (94.5734%) [J] Total mapped reads to host genome ( (B-2)-H) R2 598 (0.0522%) [I-1] Total mapped reads of (H) to exo. genomes R2 551.783 [I-3] RPMH of (I-1) R2 521.840 [I-4] PPM of (I-1) R2 9616.312 [I-5] RPMU of (I-1) R2 41 (0.0036%) [I-6] Total chimeric reads of (I-1) R2 37.831 [I-7] RPMH of (I-6) R2 35.778 [I-8] PPM of (I-6) R2 659.312 [I-9] RPMU of (I-6) R2 ## ----------------------------------------- ##=============================================## # List threshold of RPMU > 1 # List threshold of P-value < 0.001 # RPMH PPM RPMU Total Multi_Reads(All_ExoGenus) Uniq_Reads(This_Genus) wTotal Sum_ReadLength Type Exo Genus Pvalue(Uniq) 75.9128 70.4379 976.6598 158 143 15 80.718 5688 ALL_R1 bacteria Alcanivorax 0.0 74.0319 68.6926 952.4605 156 143 13 78.718 5616 ALL_R1 bacteria Eubacterium 0.0 2.8609 2.6546 36.8071 9 7 2 3.042 324 ALL_R1 bacteria Streptomyces 6.47e-10 2.8214 2.6179 36.2990 3 0 3 3.000 108 ALL_R1 bacteria Clostridium 1.26e-04 1.8809 1.7453 24.1993 2 0 2 2.000 72 ALL_R1 bacteria Lactobacillus 1.33e-15 1.4878 1.3805 19.1417 7 6 1 1.582 252 ALL_R1 bacteria Cutibacterium 1.01e-04 0.9405 0.8726 12.0997 1 0 1 1.000 36 ALL_R1 bacteria Teredinibacter 6.79e-08 0.9405 0.8726 12.0997 1 0 1 1.000 36 ALL_R1 bacteria Sphingomonas 6.79e-08 0.9405 0.8726 12.0997 1 0 1 1.000 36 ALL_R1 bacteria Leptotrichia 1.01e-04 0.9405 0.8726 12.0997 1 0 1 1.000 36 ALL_R1 bacteria Leifsonia 6.79e-08 0.9405 0.8726 12.0997 1 0 1 1.000 36 ALL_R1 bacteria Echinicola 1.01e-04 0.9405 0.8726 12.0997 1 0 1 1.000 36 ALL_R1 bacteria Acinetobacter 6.79e-08 << 28.2141 26.1792 362.9896 30 0 30 30.000 1080 ALL_R1 fungi Malassezia 0.0 1.8809 1.7453 24.1993 2 0 2 2.000 72 ALL_R1 fungi Melampsora 3.70e-06 0.9405 0.8726 12.0997 1 0 1 1.000 36 ALL_R1 fungi Cordyceps 1.01e-04 << 295.3073 274.0094 3799.2910 314 0 314 314.000 11304 ALL_R1 viral Lymphocryptovirus 0.0 << 90.1343 85.2431 1570.8359 190 173 17 97.684 6840 ALL_R2 bacteria Eubacterium 0.0 89.0252 84.1942 1551.5068 192 179 13 96.482 6912 ALL_R2 bacteria Alcanivorax 0.0 1.8657 1.7645 32.5154 3 1 2 2.022 108 ALL_R2 bacteria Bacillus 3.39e-08 0.9430 0.8918 16.4346 2 1 1 1.022 72 ALL_R2 bacteria Cutibacterium 2.40e-04 0.9227 0.8726 16.0808 1 0 1 1.000 36 ALL_R2 bacteria Intestinibacter n/a << 26.7587 25.3066 466.3429 29 0 29 29.000 1044 ALL_R2 fungi Malassezia 0.0 << 311.8772 294.9528 5435.3070 338 0 338 338.000 12168 ALL_R2 viral Lymphocryptovirus 0.0 << 0.9405 0.8726 12.0997 1 0 1 1.000 36 R1U bacteria Niastella n/a 0.9405 0.8726 12.0997 1 0 1 1.000 36 R1U bacteria Neisseria n/a 0.9405 0.8726 12.0997 1 0 1 1.000 36 R1U bacteria Leptotrichia n/a 0.9405 0.8726 12.0997 1 0 1 1.000 36 R1U bacteria Lactobacillus n/a 0.9405 0.8726 12.0997 1 0 1 1.000 36 R1U bacteria Helcococcus n/a 0.9405 0.8726 12.0997 1 0 1 1.000 36 R1U bacteria Flaviramulus n/a 0.9405 0.8726 12.0997 1 0 1 1.000 36 R1U bacteria Delftia n/a 0.9405 0.8726 12.0997 1 0 1 1.000 36 R1U bacteria Clostridium n/a << 3.7619 3.4906 48.3986 4 0 4 4.000 144 R1U fungi Malassezia n/a 0.9405 0.8726 12.0997 1 0 1 1.000 36 R1U fungi Pneumocystis n/a 0.9405 0.8726 12.0997 1 0 1 1.000 36 R1U fungi Penicillium n/a 0.9405 0.8726 12.0997 1 0 1 1.000 36 R1U fungi Melampsora n/a 0.9405 0.8726 12.0997 1 0 1 1.000 36 R1U fungi Komagataella n/a 0.9405 0.8726 12.0997 1 0 1 1.000 36 R1U fungi Cordyceps n/a 0.9405 0.8726 12.0997 1 0 1 1.000 36 R1U fungi Colletotrichum n/a 0.9405 0.8726 12.0997 1 0 1 1.000 36 R1U fungi Chaetomium n/a 0.9405 0.8726 12.0997 1 0 1 1.000 36 R1U fungi Blastomyces n/a 0.9405 0.8726 12.0997 1 0 1 1.000 36 R1U fungi Aspergillus n/a << 14.3251 13.5478 249.6543 31 29 2 15.525 1116 R2U bacteria Eubacterium n/a 13.8324 13.0818 241.0671 31 30 1 14.991 1116 R2U bacteria Alcanivorax n/a 0.9227 0.8726 16.0808 1 0 1 1.000 36 R2U bacteria Streptomyces n/a 0.9227 0.8726 16.0808 1 0 1 1.000 36 R2U bacteria Intestinibacter n/a 0.9227 0.8726 16.0808 1 0 1 1.000 36 R2U bacteria Bacillus n/a << 4.6136 4.3632 80.4039 5 0 5 5.000 180 R2U fungi Malassezia n/a