# 2020/06/13 09:36:05
# HUMAN	Target (Host) organism
# DNA	Sequencing source
# ERR251034	Replication ID
# SRP001294	Sample ID
# ERR251034_1.filt	Read1
# ERR251034_2.filt	Read2
R1	       54211132 (100.0000%)	[A] Total raw reads
R1	       52445245 (96.7426%)	[B] Total reads after QC of (A)
R1		
R1	       52445245 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R1	       96939771 (92.4200%)	[B-3] Total mapped reads of (B-2)x2
R1	        7950719 (7.5800%)	[B-4] Total unmapped reads of (B-2)x2
R1	       48637929 (92.7404%)	[F] Total mapped reads of (B-2)
R1	        3807316 (7.2596%)	[G] Total unmapped reads of (B-2)
R1	         526508 (1.0039%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R1	       51918737 (98.9961%)	[J] Total mapped reads to host genome ( (B-2)-H)
R1	          31609 (0.0603%)	[I-1] Total mapped reads of (H) to exo. genomes
R1	       608.817	[I-3] RPMH of (I-1)
R1	       602.705	[I-4] PPM of (I-1)
R1	     60035.175	[I-5] RPMU of (I-1)
R1	            174 (0.0003%)	[I-6] Total chimeric reads of (I-1)
R1	         3.351	[I-7] RPMH of (I-6)
R1	         3.318	[I-8] PPM of (I-6)
R1	       330.479	[I-9] RPMU of (I-6)
R1		
## -----------------------------------------

R2	       54211132 (100.0000%)	[A] Total raw reads
R2	       52445245 (96.7426%)	[B] Total reads after QC of (A)
R2		
R2	       52445245 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R2	       96939771 (92.4200%)	[B-3] Total mapped reads of (B-2)x2
R2	        7950719 (7.5800%)	[B-4] Total unmapped reads of (B-2)x2
R2	       48301842 (92.0996%)	[F] Total mapped reads of (B-2)
R2	        4143403 (7.9004%)	[G] Total unmapped reads of (B-2)
R2	         651989 (1.2432%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R2	       51793256 (98.7568%)	[J] Total mapped reads to host genome ( (B-2)-H)
R2	          31390 (0.0599%)	[I-1] Total mapped reads of (H) to exo. genomes
R2	       606.064	[I-3] RPMH of (I-1)
R2	       598.529	[I-4] PPM of (I-1)
R2	     48144.984	[I-5] RPMU of (I-1)
R2	            159 (0.0003%)	[I-6] Total chimeric reads of (I-1)
R2	         3.070	[I-7] RPMH of (I-6)
R2	         3.032	[I-8] PPM of (I-6)
R2	       243.869	[I-9] RPMU of (I-6)
R2		
## -----------------------------------------

##=============================================##
# List threshold of RPMU   > 1
# List threshold of P-value < 0.001
# RPMH	PPM	RPMU	Total	Multi_Reads(All_ExoGenus)	Uniq_Reads(This_Genus)	wTotal	Sum_ReadLength	Type	Exo	Genus	Pvalue(Uniq)
607.7575	601.6561	59930.7133	31554	0	31554	31554.000	3043113	ALL_R1	viral	Lymphocryptovirus	0.0
<<
604.6926	597.1752	48036.0865	31319	0	31319	31319.000	2946011	ALL_R2	viral	Lymphocryptovirus	0.0
<<
0.0193	0.0191	1.8993	1	0	1	1.000	40	R1U	bacteria	Flavobacterium	n/a	
0.0193	0.0191	1.8993	1	0	1	1.000	100	R1U	bacteria	Bradyrhizobium	n/a	
<<
3.2936	3.2605	324.7814	171	0	171	171.000	16070	R1U	viral	Lymphocryptovirus	n/a	
<<
0.0386	0.0381	3.0675	2	0	2	2.000	75	R2U	bacteria	Bacillus	n/a	
0.0193	0.0191	1.5338	1	0	1	1.000	39	R2U	bacteria	Thermodesulfobacterium	n/a	
0.0193	0.0191	1.5338	1	0	1	1.000	39	R2U	bacteria	Lysinibacillus	n/a	
0.0193	0.0191	1.5338	1	0	1	1.000	39	R2U	bacteria	Anditalea	n/a	
0.0193	0.0191	1.5338	1	0	1	1.000	38	R2U	bacteria	Legionella	n/a	
0.0193	0.0191	1.5338	1	0	1	1.000	38	R2U	bacteria	Acinetobacter	n/a	
0.0193	0.0191	1.5338	1	0	1	1.000	37	R2U	bacteria	Oenococcus	n/a	
0.0193	0.0191	1.5338	1	0	1	1.000	36	R2U	bacteria	Nostoc	n/a	
0.0193	0.0191	1.5338	1	0	1	1.000	36	R2U	bacteria	Bacteroides	n/a	
<<
2.8382	2.8029	225.4639	147	0	147	147.000	13917	R2U	viral	Lymphocryptovirus	n/a	
0.0193	0.0191	1.5338	1	0	1	1.000	38	R2U	viral	Prymnesiovirus	n/a