# 2020/07/22 07:44:04
# HUMAN	Target (Host) organism
# DNA	Sequencing source
# ERR242092	Replication ID
# SRP000540	Sample ID
# ERR242092_1.filt	Read1
# ERR242092_2.filt	Read2
R1	        1686831 (100.0000%)	[A] Total raw reads
R1	        1656421 (98.1972%)	[B] Total reads after QC of (A)
R1		
R1	        1656421 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R1	        3050766 (92.0891%)	[B-3] Total mapped reads of (B-2)x2
R1	         262076 (7.9109%)	[B-4] Total unmapped reads of (B-2)x2
R1	        1533399 (92.5730%)	[F] Total mapped reads of (B-2)
R1	         123022 (7.4270%)	[G] Total unmapped reads of (B-2)
R1	          13931 (0.8410%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R1	        1642490 (99.1590%)	[J] Total mapped reads to host genome ( (B-2)-H)
R1	           3712 (0.2241%)	[I-1] Total mapped reads of (H) to exo. genomes
R1	      2259.983	[I-3] RPMH of (I-1)
R1	      2240.976	[I-4] PPM of (I-1)
R1	    266456.105	[I-5] RPMU of (I-1)
R1	              7 (0.0004%)	[I-6] Total chimeric reads of (I-1)
R1	         4.262	[I-7] RPMH of (I-6)
R1	         4.226	[I-8] PPM of (I-6)
R1	       502.477	[I-9] RPMU of (I-6)
R1		
## -----------------------------------------

R2	        1686831 (100.0000%)	[A] Total raw reads
R2	        1656421 (98.1972%)	[B] Total reads after QC of (A)
R2		
R2	        1656421 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R2	        3050766 (92.0891%)	[B-3] Total mapped reads of (B-2)x2
R2	         262076 (7.9109%)	[B-4] Total unmapped reads of (B-2)x2
R2	        1517367 (91.6052%)	[F] Total mapped reads of (B-2)
R2	         139054 (8.3948%)	[G] Total unmapped reads of (B-2)
R2	          19977 (1.2060%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R2	        1636444 (98.7940%)	[J] Total mapped reads to host genome ( (B-2)-H)
R2	           3609 (0.2179%)	[I-1] Total mapped reads of (H) to exo. genomes
R2	      2205.392	[I-3] RPMH of (I-1)
R2	      2178.794	[I-4] PPM of (I-1)
R2	    180657.756	[I-5] RPMU of (I-1)
R2	              2 (0.0001%)	[I-6] Total chimeric reads of (I-1)
R2	         1.222	[I-7] RPMH of (I-6)
R2	         1.207	[I-8] PPM of (I-6)
R2	       100.115	[I-9] RPMU of (I-6)
R2		
## -----------------------------------------

##=============================================##
# List threshold of RPMU   > 1
# List threshold of P-value < 0.001
# RPMH	PPM	RPMU	Total	Multi_Reads(All_ExoGenus)	Uniq_Reads(This_Genus)	wTotal	Sum_ReadLength	Type	Exo	Genus	Pvalue(Uniq)
2258.7657	2239.7688	266312.5404	3710	0	3710	3710.000	369877	ALL_R1	viral	Lymphocryptovirus	0.0
<<
2204.1695	2177.5865	180557.6413	3607	0	3607	3607.000	359692	ALL_R2	viral	Lymphocryptovirus	0.0
<<
4.2618	4.2260	502.4765	7	0	7	7.000	696	R1U	viral	Lymphocryptovirus	n/a	
<<
1.2222	1.2074	100.1151	2	0	2	2.000	199	R2U	viral	Lymphocryptovirus	n/a