# 2020/07/22 03:13:35
# HUMAN	Target (Host) organism
# DNA	Sequencing source
# ERR241892	Replication ID
# SRP000540	Sample ID
# ERR241892_1.filt	Read1
# ERR241892_2.filt	Read2
R1	        1682204 (100.0000%)	[A] Total raw reads
R1	        1652051 (98.2075%)	[B] Total reads after QC of (A)
R1		
R1	        1652051 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R1	        3044243 (92.1353%)	[B-3] Total mapped reads of (B-2)x2
R1	         259859 (7.8647%)	[B-4] Total unmapped reads of (B-2)x2
R1	        1530652 (92.6516%)	[F] Total mapped reads of (B-2)
R1	         121399 (7.3484%)	[G] Total unmapped reads of (B-2)
R1	          13961 (0.8451%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R1	        1638090 (99.1549%)	[J] Total mapped reads to host genome ( (B-2)-H)
R1	           3652 (0.2211%)	[I-1] Total mapped reads of (H) to exo. genomes
R1	      2229.426	[I-3] RPMH of (I-1)
R1	      2210.585	[I-4] PPM of (I-1)
R1	    261585.846	[I-5] RPMU of (I-1)
R1	              4 (0.0002%)	[I-6] Total chimeric reads of (I-1)
R1	         2.442	[I-7] RPMH of (I-6)
R1	         2.421	[I-8] PPM of (I-6)
R1	       286.512	[I-9] RPMU of (I-6)
R1		
## -----------------------------------------

R2	        1682204 (100.0000%)	[A] Total raw reads
R2	        1652051 (98.2075%)	[B] Total reads after QC of (A)
R2		
R2	        1652051 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R2	        3044243 (92.1353%)	[B-3] Total mapped reads of (B-2)x2
R2	         259859 (7.8647%)	[B-4] Total unmapped reads of (B-2)x2
R2	        1513591 (91.6189%)	[F] Total mapped reads of (B-2)
R2	         138460 (8.3811%)	[G] Total unmapped reads of (B-2)
R2	          20022 (1.2119%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R2	        1632029 (98.7881%)	[J] Total mapped reads to host genome ( (B-2)-H)
R2	           3587 (0.2171%)	[I-1] Total mapped reads of (H) to exo. genomes
R2	      2197.878	[I-3] RPMH of (I-1)
R2	      2171.240	[I-4] PPM of (I-1)
R2	    179152.932	[I-5] RPMU of (I-1)
R2	              3 (0.0002%)	[I-6] Total chimeric reads of (I-1)
R2	         1.838	[I-7] RPMH of (I-6)
R2	         1.816	[I-8] PPM of (I-6)
R2	       149.835	[I-9] RPMU of (I-6)
R2		
## -----------------------------------------

##=============================================##
# List threshold of RPMU   > 1
# List threshold of P-value < 0.001
# RPMH	PPM	RPMU	Total	Multi_Reads(All_ExoGenus)	Uniq_Reads(This_Genus)	wTotal	Sum_ReadLength	Type	Exo	Genus	Pvalue(Uniq)
2227.5943	2208.7696	261370.9620	3649	0	3649	3649.000	364036	ALL_R1	viral	Lymphocryptovirus	0.0
<<
2197.2649	2170.6352	179102.9867	3586	0	3586	3586.000	357600	ALL_R2	viral	Lymphocryptovirus	0.0
<<
2.4419	2.4212	286.5124	4	0	4	4.000	400	R1U	viral	Lymphocryptovirus	n/a	
<<
1.8382	1.8159	149.8352	3	0	3	3.000	299	R2U	viral	Lymphocryptovirus	n/a