# 2020/07/21 21:36:35
# HUMAN	Target (Host) organism
# DNA	Sequencing source
# ERR241184	Replication ID
# SRP000540	Sample ID
# ERR241184_1.filt	Read1
# ERR241184_2.filt	Read2
R1	        1582466 (100.0000%)	[A] Total raw reads
R1	        1554114 (98.2084%)	[B] Total reads after QC of (A)
R1		
R1	        1554114 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R1	        2851319 (91.7346%)	[B-3] Total mapped reads of (B-2)x2
R1	         256909 (8.2654%)	[B-4] Total unmapped reads of (B-2)x2
R1	        1434621 (92.3112%)	[F] Total mapped reads of (B-2)
R1	         119493 (7.6888%)	[G] Total unmapped reads of (B-2)
R1	          13575 (0.8735%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R1	        1540539 (99.1265%)	[J] Total mapped reads to host genome ( (B-2)-H)
R1	           3441 (0.2214%)	[I-1] Total mapped reads of (H) to exo. genomes
R1	      2233.634	[I-3] RPMH of (I-1)
R1	      2214.123	[I-4] PPM of (I-1)
R1	    253480.663	[I-5] RPMU of (I-1)
R1	              3 (0.0002%)	[I-6] Total chimeric reads of (I-1)
R1	         1.947	[I-7] RPMH of (I-6)
R1	         1.930	[I-8] PPM of (I-6)
R1	       220.994	[I-9] RPMU of (I-6)
R1		
## -----------------------------------------

R2	        1582466 (100.0000%)	[A] Total raw reads
R2	        1554114 (98.2084%)	[B] Total reads after QC of (A)
R2		
R2	        1554114 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R2	        2851319 (91.7346%)	[B-3] Total mapped reads of (B-2)x2
R2	         256909 (8.2654%)	[B-4] Total unmapped reads of (B-2)x2
R2	        1416698 (91.1579%)	[F] Total mapped reads of (B-2)
R2	         137416 (8.8421%)	[G] Total unmapped reads of (B-2)
R2	          20651 (1.3288%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R2	        1533463 (98.6712%)	[J] Total mapped reads to host genome ( (B-2)-H)
R2	           3379 (0.2174%)	[I-1] Total mapped reads of (H) to exo. genomes
R2	      2203.509	[I-3] RPMH of (I-1)
R2	      2174.229	[I-4] PPM of (I-1)
R2	    163624.038	[I-5] RPMU of (I-1)
R2	              7 (0.0005%)	[I-6] Total chimeric reads of (I-1)
R2	         4.565	[I-7] RPMH of (I-6)
R2	         4.504	[I-8] PPM of (I-6)
R2	       338.967	[I-9] RPMU of (I-6)
R2		
## -----------------------------------------

##=============================================##
# List threshold of RPMU   > 1
# List threshold of P-value < 0.001
# RPMH	PPM	RPMU	Total	Multi_Reads(All_ExoGenus)	Uniq_Reads(This_Genus)	wTotal	Sum_ReadLength	Type	Exo	Genus	Pvalue(Uniq)
2230.3882	2210.9060	253112.3389	3436	0	3436	3436.000	342418	ALL_R1	viral	Lymphocryptovirus	0.0
<<
2201.5530	2172.2988	163478.7662	3376	0	3376	3376.000	336388	ALL_R2	viral	Lymphocryptovirus	0.0
<<
1.9474	1.9304	220.9945	3	0	3	3.000	298	R1U	viral	Lymphocryptovirus	n/a	
<<
4.5648	4.5042	338.9666	7	0	7	7.000	698	R2U	viral	Lymphocryptovirus	n/a