# 2020/07/15 00:02:34 # HUMAN Target (Host) organism # RNA Sequencing source # ERR188418 Replication ID # ERR188418 Sample ID # ERR188418_1 Read1 # ERR188418_2 Read2 R1 32634443 (100.0000%) [A] Total raw reads R1 31809064 (97.4708%) [B] Total reads after QC of (A) R1 R1 31809064 (100.0000%) [B-2] Total reads of (B) passed to HISAT2 R1 55461546 (87.1788%) [B-3] Total mapped reads of (B-2)x2 R1 8156582 (12.8212%) [B-4] Total unmapped reads of (B-2)x2 R1 27812041 (87.4343%) [F] Total mapped reads of (B-2) R1 3997023 (12.5657%) [G] Total unmapped reads of (B-2) R1 144450 (0.4541%) [H] Total unmapped reads of (B-2) after running BLASTn with (G) R1 31664614 (99.5459%) [J] Total mapped reads to host genome ( (B-2)-H) R1 104240 (0.3277%) [I-1] Total mapped reads of (H) to exo. genomes R1 3292.003 [I-3] RPMH of (I-1) R1 3277.053 [I-4] PPM of (I-1) R1 721633.783 [I-5] RPMU of (I-1) R1 353 (0.0011%) [I-6] Total chimeric reads of (I-1) R1 11.148 [I-7] RPMH of (I-6) R1 11.097 [I-8] PPM of (I-6) R1 2443.752 [I-9] RPMU of (I-6) R1 ## ----------------------------------------- R2 32634443 (100.0000%) [A] Total raw reads R2 31809064 (97.4708%) [B] Total reads after QC of (A) R2 R2 31809064 (100.0000%) [B-2] Total reads of (B) passed to HISAT2 R2 55461546 (87.1788%) [B-3] Total mapped reads of (B-2)x2 R2 8156582 (12.8212%) [B-4] Total unmapped reads of (B-2)x2 R2 27649505 (86.9234%) [F] Total mapped reads of (B-2) R2 4159559 (13.0766%) [G] Total unmapped reads of (B-2) R2 207158 (0.6513%) [H] Total unmapped reads of (B-2) after running BLASTn with (G) R2 31601906 (99.3487%) [J] Total mapped reads to host genome ( (B-2)-H) R2 103464 (0.3253%) [I-1] Total mapped reads of (H) to exo. genomes R2 3273.980 [I-3] RPMH of (I-1) R2 3252.658 [I-4] PPM of (I-1) R2 499444.868 [I-5] RPMU of (I-1) R2 350 (0.0011%) [I-6] Total chimeric reads of (I-1) R2 11.075 [I-7] RPMH of (I-6) R2 11.003 [I-8] PPM of (I-6) R2 1689.532 [I-9] RPMU of (I-6) R2 ## ----------------------------------------- ##=============================================## # List threshold of RPMU > 1 # List threshold of P-value < 0.001 # RPMH PPM RPMU Total Multi_Reads(All_ExoGenus) Uniq_Reads(This_Genus) wTotal Sum_ReadLength Type Exo Genus Pvalue(Uniq) 281.3319 280.0543 61670.2388 19907 16998 2909 8908.266 1467914 ALL_R1 bacteria Nocardia 0.0 60.3332 60.0593 13225.5382 6723 6654 69 1910.429 490193 ALL_R1 bacteria Ralstonia 3.98e-12 8.2227 8.1854 1802.4922 3197 3119 78 260.370 235139 ALL_R1 bacteria Pseudomonas 1.19e-08 3.7165 3.6996 814.6833 240 137 103 117.681 17497 ALL_R1 bacteria Escherichia 6.88e-48 << 2541.9227 2530.3794 557210.1073 80489 0 80489 80489.000 5898539 ALL_R1 viral Lymphocryptovirus 0.0 << 368.7532 366.3517 56253.2222 19801 11142 8659 11653.305 1451169 ALL_R2 bacteria Nocardia 0.0 54.9584 54.6005 8383.8906 6674 6617 57 1736.790 479951 ALL_R2 bacteria Ralstonia 3.24e-06 3.9603 3.9345 604.1379 222 101 121 125.152 16272 ALL_R2 bacteria Escherichia 1.67e-77 3.6441 3.6204 555.9090 3048 2979 69 115.161 225232 ALL_R2 bacteria Pseudomonas 1.53e-05 << 2524.4203 2507.9799 385099.7499 79777 1 79776 79776.494 5863147 ALL_R2 viral Lymphocryptovirus 0.0 << 0.3115 0.3101 68.2935 18 13 5 9.865 1345 R1U bacteria Nocardia n/a 0.1415 0.1409 31.0211 60 59 1 4.481 4150 R1U bacteria Mycobacterium n/a 0.1378 0.1372 30.2042 59 58 1 4.363 4078 R1U bacteria Bifidobacterium n/a 0.0485 0.0483 10.6404 4 3 1 1.537 261 R1U bacteria Catellicoccus n/a 0.0316 0.0314 6.9228 1 0 1 1.000 41 R1U bacteria Lachnoclostridium n/a << 0.0632 0.0629 13.8456 2 0 2 2.000 112 R1U fungi Microsporum n/a 0.0334 0.0332 7.3174 2 1 1 1.057 135 R1U fungi Schizosaccharomyces n/a 0.0316 0.0314 6.9228 1 0 1 1.000 73 R1U fungi Histoplasma n/a 0.0316 0.0314 6.9228 1 0 1 1.000 59 R1U fungi Cladophialophora n/a 0.0316 0.0314 6.9228 1 0 1 1.000 53 R1U fungi Coprinopsis n/a 0.0316 0.0314 6.9228 1 0 1 1.000 50 R1U fungi Schizophyllum n/a << 7.9900 7.9537 1751.4711 253 0 253 253.000 18325 R1U viral Lymphocryptovirus n/a << 0.5680 0.5643 86.6537 24 8 16 17.951 1745 R2U bacteria Nocardia n/a 0.0642 0.0638 9.7945 3 1 2 2.029 216 R2U bacteria Catellicoccus n/a 0.0634 0.0629 9.6641 3 1 2 2.002 160 R2U bacteria Exiguobacterium n/a 0.0316 0.0314 4.8272 1 0 1 1.000 55 R2U bacteria Bacillus n/a 0.0316 0.0314 4.8272 1 0 1 1.000 54 R2U bacteria Fusobacterium n/a 0.0316 0.0314 4.8272 1 0 1 1.000 47 R2U bacteria Arcobacter n/a 0.0316 0.0314 4.8272 1 0 1 1.000 42 R2U bacteria Plesiomonas n/a 0.0316 0.0314 4.8272 1 0 1 1.000 42 R2U bacteria Oerskovia n/a 0.0316 0.0314 4.8272 1 0 1 1.000 39 R2U bacteria Lachnoclostridium n/a 0.0316 0.0314 4.8272 1 0 1 1.000 39 R2U bacteria Algoriphagus n/a 0.0316 0.0314 4.8272 1 0 1 1.000 39 R2U bacteria Afipia n/a 0.0316 0.0314 4.8272 1 0 1 1.000 37 R2U bacteria Chryseobacterium n/a 0.0316 0.0314 4.8272 1 0 1 1.000 36 R2U bacteria Ruminococcus n/a 0.0316 0.0314 4.8272 1 0 1 1.000 36 R2U bacteria Burkholderia n/a << 0.1153 0.1146 17.5904 6 3 3 3.644 307 R2U fungi Parastagonospora n/a 0.0789 0.0784 12.0391 3 1 2 2.494 199 R2U fungi Histoplasma n/a 0.0789 0.0784 12.0391 3 1 2 2.494 136 R2U fungi Lodderomyces n/a 0.0709 0.0705 10.8178 4 2 2 2.241 262 R2U fungi Aspergillus n/a 0.0633 0.0629 9.6545 2 0 2 2.000 74 R2U fungi Postia n/a 0.0633 0.0629 9.6545 2 0 2 2.000 122 R2U fungi Aureobasidium n/a 0.0633 0.0629 9.6545 2 0 2 2.000 115 R2U fungi Pneumocystis n/a 0.0633 0.0629 9.6545 2 0 2 2.000 113 R2U fungi Trichophyton n/a 0.0633 0.0629 9.6545 2 0 2 2.000 105 R2U fungi Batrachochytrium n/a 0.0633 0.0629 9.6545 2 0 2 2.000 100 R2U fungi Pseudozyma n/a 0.0473 0.0470 7.2119 2 1 1 1.494 98 R2U fungi Trichosporon n/a 0.0473 0.0470 7.2119 2 1 1 1.494 72 R2U fungi Malassezia n/a 0.0394 0.0391 6.0051 2 1 1 1.244 120 R2U fungi Gaeumannomyces n/a 0.0354 0.0352 5.4065 2 1 1 1.120 99 R2U fungi Marssonina n/a 0.0354 0.0352 5.4065 2 1 1 1.120 111 R2U fungi Paracoccidioides n/a 0.0336 0.0334 5.1217 3 2 1 1.061 157 R2U fungi Trichoderma n/a 0.0317 0.0315 4.8369 2 1 1 1.002 141 R2U fungi Neofusicoccum n/a 0.0317 0.0315 4.8369 2 1 1 1.002 109 R2U fungi Sclerotinia n/a 0.0316 0.0314 4.8272 1 0 1 1.000 74 R2U fungi Lachancea n/a 0.0316 0.0314 4.8272 1 0 1 1.000 55 R2U fungi Yarrowia n/a 0.0316 0.0314 4.8272 1 0 1 1.000 55 R2U fungi Schizophyllum n/a 0.0316 0.0314 4.8272 1 0 1 1.000 47 R2U fungi Spizellomyces n/a 0.0316 0.0314 4.8272 1 0 1 1.000 47 R2U fungi Rasamsonia n/a 0.0316 0.0314 4.8272 1 0 1 1.000 46 R2U fungi Cyphellophora n/a 0.0316 0.0314 4.8272 1 0 1 1.000 39 R2U fungi Capronia n/a 0.0316 0.0314 4.8272 1 0 1 1.000 38 R2U fungi Auricularia n/a 0.0316 0.0314 4.8272 1 0 1 1.000 36 R2U fungi Stereum n/a << 7.9426 7.8908 1211.6356 251 0 251 251.000 18027 R2U viral Lymphocryptovirus n/a