# 2020/07/12 22:10:06 # HUMAN Target (Host) organism # RNA Sequencing source # ERR188072 Replication ID # ERR188072 Sample ID # ERR188072_1 Read1 # ERR188072_2 Read2 R1 32298325 (100.0000%) [A] Total raw reads R1 31533143 (97.6309%) [B] Total reads after QC of (A) R1 R1 31533143 (100.0000%) [B-2] Total reads of (B) passed to HISAT2 R1 46966104 (74.4710%) [B-3] Total mapped reads of (B-2)x2 R1 16100182 (25.5290%) [B-4] Total unmapped reads of (B-2)x2 R1 23581179 (74.7822%) [F] Total mapped reads of (B-2) R1 7951964 (25.2178%) [G] Total unmapped reads of (B-2) R1 87020 (0.2760%) [H] Total unmapped reads of (B-2) after running BLASTn with (G) R1 31446123 (99.7240%) [J] Total mapped reads to host genome ( (B-2)-H) R1 47675 (0.1512%) [I-1] Total mapped reads of (H) to exo. genomes R1 1516.085 [I-3] RPMH of (I-1) R1 1511.901 [I-4] PPM of (I-1) R1 547862.560 [I-5] RPMU of (I-1) R1 239 (0.0008%) [I-6] Total chimeric reads of (I-1) R1 7.600 [I-7] RPMH of (I-6) R1 7.579 [I-8] PPM of (I-6) R1 2746.495 [I-9] RPMU of (I-6) R1 ## ----------------------------------------- R2 32298325 (100.0000%) [A] Total raw reads R2 31533143 (97.6309%) [B] Total reads after QC of (A) R2 R2 31533143 (100.0000%) [B-2] Total reads of (B) passed to HISAT2 R2 46966104 (74.4710%) [B-3] Total mapped reads of (B-2)x2 R2 16100182 (25.5290%) [B-4] Total unmapped reads of (B-2)x2 R2 23384925 (74.1598%) [F] Total mapped reads of (B-2) R2 8148218 (25.8402%) [G] Total unmapped reads of (B-2) R2 128521 (0.4076%) [H] Total unmapped reads of (B-2) after running BLASTn with (G) R2 31404622 (99.5924%) [J] Total mapped reads to host genome ( (B-2)-H) R2 47912 (0.1519%) [I-1] Total mapped reads of (H) to exo. genomes R2 1525.635 [I-3] RPMH of (I-1) R2 1519.417 [I-4] PPM of (I-1) R2 372795.107 [I-5] RPMU of (I-1) R2 290 (0.0009%) [I-6] Total chimeric reads of (I-1) R2 9.234 [I-7] RPMH of (I-6) R2 9.197 [I-8] PPM of (I-6) R2 2256.441 [I-9] RPMU of (I-6) R2 ## ----------------------------------------- ##=============================================## # List threshold of RPMU > 1 # List threshold of P-value < 0.001 # RPMH PPM RPMU Total Multi_Reads(All_ExoGenus) Uniq_Reads(This_Genus) wTotal Sum_ReadLength Type Exo Genus Pvalue(Uniq) 53.1174 52.9708 19194.8518 2514 1518 996 1670.336 186202 ALL_R1 bacteria Nocardia 0.0 3.0834 3.0749 1114.2381 104 8 96 96.961 7553 ALL_R1 bacteria Escherichia 4.77e-27 << 1345.9529 1342.2385 486382.4408 42325 0 42325 42325.000 3113835 ALL_R1 viral Lymphocryptovirus 0.0 << 53.1120 52.8956 12978.1359 2514 1507 1007 1667.963 184960 ALL_R2 bacteria Nocardia 0.0 2.9458 2.9338 719.8123 101 9 92 92.511 7421 ALL_R2 bacteria Escherichia 4.54e-24 << 1344.9753 1339.4936 328650.1194 42239 1 42238 42238.442 3100539 ALL_R2 viral Lymphocryptovirus 0.0 << 0.1987 0.1982 71.8111 9 5 4 6.249 670 R1U bacteria Nocardia n/a 0.0954 0.0951 34.4748 3 0 3 3.000 225 R1U bacteria Lachnoclostridium n/a 0.0525 0.0524 18.9841 4 3 1 1.652 195 R1U bacteria Exiguobacterium n/a 0.0318 0.0317 11.4916 1 0 1 1.000 51 R1U bacteria Flammeovirga n/a 0.0318 0.0317 11.4916 1 0 1 1.000 39 R1U bacteria Rhodopseudomonas n/a << 0.0636 0.0634 22.9832 3 1 2 2.000 200 R1U fungi Schizosaccharomyces n/a 0.0636 0.0634 22.9832 3 1 2 2.000 195 R1U fungi Leptosphaeria n/a 0.0462 0.0461 16.6973 3 2 1 1.453 163 R1U fungi Verticillium n/a 0.0319 0.0318 11.5376 3 2 1 1.004 144 R1U fungi Botrytis n/a 0.0318 0.0317 11.4916 2 1 1 1.000 110 R1U fungi Laccaria n/a 0.0318 0.0317 11.4916 2 1 1 1.000 109 R1U fungi Kluyveromyces n/a 0.0318 0.0317 11.4916 2 1 1 1.000 104 R1U fungi Histoplasma n/a 0.0318 0.0317 11.4916 2 1 1 1.000 104 R1U fungi Fomitiporia n/a 0.0318 0.0317 11.4916 2 1 1 1.000 100 R1U fungi Pseudogymnoascus n/a 0.0318 0.0317 11.4916 1 0 1 1.000 37 R1U fungi Cutaneotrichosporon n/a << 5.4061 5.3912 1953.5739 170 0 170 170.000 12421 R1U viral Lymphocryptovirus n/a << 0.3251 0.3238 79.4501 13 5 8 10.211 890 R2U bacteria Nocardia n/a 0.2132 0.2123 52.0927 14 10 4 6.695 764 R2U bacteria Nocardioides n/a 0.1519 0.1512 37.1068 7 4 3 4.769 409 R2U bacteria Spirochaeta n/a 0.1274 0.1269 31.1233 4 0 4 4.000 291 R2U bacteria Lachnoclostridium n/a 0.0955 0.0951 23.3425 3 0 3 3.000 168 R2U bacteria Roseobacter n/a 0.0637 0.0634 15.5617 2 0 2 2.000 88 R2U bacteria Fusobacterium n/a 0.0505 0.0503 12.3482 4 3 1 1.587 238 R2U bacteria Catellicoccus n/a 0.0429 0.0427 10.4730 6 5 1 1.346 354 R2U bacteria Mycobacterium n/a 0.0318 0.0317 7.7808 1 0 1 1.000 47 R2U bacteria Streptomyces n/a 0.0318 0.0317 7.7808 1 0 1 1.000 41 R2U bacteria Fictibacillus n/a 0.0318 0.0317 7.7808 1 0 1 1.000 38 R2U bacteria Alicyclobacillus n/a 0.0318 0.0317 7.7808 1 0 1 1.000 37 R2U bacteria Kallipyga n/a 0.0318 0.0317 7.7808 1 0 1 1.000 36 R2U bacteria Ureaplasma n/a << 0.2383 0.2373 58.2317 11 4 7 7.484 577 R2U fungi Leptosphaeria n/a 0.1415 0.1409 34.5780 7 3 4 4.444 401 R2U fungi Aspergillus n/a 0.1121 0.1117 27.4041 7 5 2 3.522 347 R2U fungi Metschnikowia n/a 0.1097 0.1092 26.7972 6 3 3 3.444 360 R2U fungi Coccidioides n/a 0.1063 0.1059 25.9802 12 11 1 3.339 706 R2U fungi Parastagonospora n/a 0.0965 0.0961 23.5681 9 7 2 3.029 512 R2U fungi Verticillium n/a 0.0955 0.0951 23.3425 4 1 3 3.000 241 R2U fungi Melampsora n/a 0.0955 0.0951 23.3425 4 1 3 3.000 216 R2U fungi Enterocytozoon n/a 0.0803 0.0800 19.6233 7 6 1 2.522 377 R2U fungi Schizosaccharomyces n/a 0.0727 0.0724 17.7559 5 3 2 2.282 270 R2U fungi Cryptococcus n/a 0.0664 0.0662 16.2308 3 1 2 2.086 169 R2U fungi Gaeumannomyces n/a 0.0664 0.0662 16.2308 3 1 2 2.086 131 R2U fungi Auricularia n/a 0.0650 0.0647 15.8729 5 3 2 2.040 334 R2U fungi Histoplasma n/a 0.0637 0.0635 15.5772 5 3 2 2.002 272 R2U fungi Paracoccidioides n/a 0.0637 0.0634 15.5617 3 1 2 2.000 174 R2U fungi Spizellomyces n/a 0.0600 0.0597 14.6591 4 3 1 1.884 176 R2U fungi Vavraia n/a 0.0460 0.0459 11.2511 6 5 1 1.446 324 R2U fungi Lodderomyces n/a 0.0386 0.0384 9.4304 4 3 1 1.212 236 R2U fungi Phanerochaete n/a 0.0386 0.0384 9.4304 4 3 1 1.212 195 R2U fungi Laccaria n/a 0.0381 0.0379 9.3059 4 3 1 1.196 218 R2U fungi Exophiala n/a 0.0346 0.0344 8.4500 3 2 1 1.086 156 R2U fungi Trichosporon n/a 0.0346 0.0344 8.4500 2 1 1 1.086 124 R2U fungi Pseudogymnoascus n/a 0.0331 0.0329 8.0765 3 2 1 1.038 172 R2U fungi Bipolaris n/a 0.0325 0.0323 7.9364 6 5 1 1.020 310 R2U fungi Clavispora n/a 0.0319 0.0318 7.8042 3 2 1 1.003 183 R2U fungi Sphaerulina n/a 0.0319 0.0318 7.7964 5 4 1 1.002 290 R2U fungi Talaromyces n/a 0.0319 0.0317 7.7886 4 3 1 1.001 214 R2U fungi Thielavia n/a 0.0319 0.0317 7.7886 3 2 1 1.001 192 R2U fungi Penicillium n/a 0.0318 0.0317 7.7808 4 3 1 1.000 222 R2U fungi Phycomyces n/a 0.0318 0.0317 7.7808 2 1 1 1.000 143 R2U fungi Pneumocystis n/a 0.0318 0.0317 7.7808 2 1 1 1.000 115 R2U fungi Mixia n/a 0.0318 0.0317 7.7808 2 1 1 1.000 108 R2U fungi Rhodotorula n/a 0.0318 0.0317 7.7808 1 0 1 1.000 74 R2U fungi Cordyceps n/a 0.0318 0.0317 7.7808 1 0 1 1.000 69 R2U fungi Cyphellophora n/a 0.0318 0.0317 7.7808 1 0 1 1.000 63 R2U fungi Babjeviella n/a 0.0318 0.0317 7.7808 1 0 1 1.000 56 R2U fungi Rasamsonia n/a 0.0318 0.0317 7.7808 1 0 1 1.000 44 R2U fungi Ustilago n/a 0.0318 0.0317 7.7808 1 0 1 1.000 36 R2U fungi Tsuchiyaea n/a << 4.6808 4.6618 1143.7820 147 0 147 147.000 10612 R2U viral Lymphocryptovirus n/a 0.0318 0.0317 7.7808 1 0 1 1.000 55 R2U viral Betabaculovirus n/a 0.0318 0.0317 7.7808 1 0 1 1.000 37 R2U viral Orthobunyavirus n/a