# 2018/01/17 18:36:26
# HUMAN	Target (Host) organism
# RNA	Sequencing source
# BL-41_1	Replication ID
# BL-41	Sample ID
# CVCL_1087_1	Read1
# CVCL_1087_2	Read2
R1	 100704028 (100.0000%)	[A] Total raw reads
R1	  76228823 (75.6959%)	[B] Total reads after QC of (A)
R1		
R1	  76228823 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R1	 143831415 (94.3419%)	[B-3] Total mapped reads of (B-2)x2
R1	   8626231 (5.6581%)	[B-4] Total unmapped reads of (B-2)x2
R1	  72392351 (94.9672%)	[F] Total mapped reads of (B-2)
R1	   3836472 (5.0328%)	[G] Total unmapped reads of (B-2)
R1	    212427 (0.2787%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R1	  76016396 (99.7213%)	[J] Total mapped reads to host genome ( (B-2)-H)
R1	      4203 (0.0055%)	[I-1] Total mapped reads of (H) to exo. genomes
R1	        55.291	[I-3] RPMH of (I-1)
R1	        55.137	[I-4] PPM of (I-1)
R1	        95 (0.0001%)	[I-5] Total chimeric reads of (I-1)
R1	         1.250	[I-7] RPMH of (I-5)
R1	         1.246	[I-8] PPM of (I-5)
R1		
## -----------------------------------------

R2	 100704028 (100.0000%)	[A] Total raw reads
R2	  76228823 (75.6959%)	[B] Total reads after QC of (A)
R2		
R2	  76228823 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R2	 143831415 (94.3419%)	[B-3] Total mapped reads of (B-2)x2
R2	   8626231 (5.6581%)	[B-4] Total unmapped reads of (B-2)x2
R2	  71439064 (93.7166%)	[F] Total mapped reads of (B-2)
R2	   4789759 (6.2834%)	[G] Total unmapped reads of (B-2)
R2	    546275 (0.7166%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R2	  75682548 (99.2834%)	[J] Total mapped reads to host genome ( (B-2)-H)
R2	      4399 (0.0058%)	[I-1] Total mapped reads of (H) to exo. genomes
R2	        58.124	[I-3] RPMH of (I-1)
R2	        57.708	[I-4] PPM of (I-1)
R2	       260 (0.0003%)	[I-5] Total chimeric reads of (I-1)
R2	         3.435	[I-7] RPMH of (I-5)
R2	         3.411	[I-8] PPM of (I-5)
R2		
## -----------------------------------------

##=============================================##
# List threshold of RPMH   > 1
# List threshold of P-value < 0.001
# RPMH	PPM	Total	Multi_Reads(All_ExoGenus)	Uniq_Reads(This_Genus)	wTotal	Sum_ReadLength	Type	Exo	Genus	Pvalue(Uniq)
8.9075	8.8827	1126	702	424	677.118	104120	ALL_R1	bacteria	Pseudomonas	0.0
3.3095	3.3003	829	782	47	251.577	76508	ALL_R1	bacteria	Sphingomonas	7.33e-261
2.6784	2.6710	378	220	158	203.606	35195	ALL_R1	bacteria	Staphylococcus	0.0
2.3887	2.3821	514	383	131	181.584	47260	ALL_R1	bacteria	Corynebacterium	0.0
2.3761	2.3695	492	400	92	180.623	45342	ALL_R1	bacteria	Sphingobium	0.0
2.3195	2.3130	529	463	66	176.321	49478	ALL_R1	bacteria	Acinetobacter	0.0
2.2477	2.2414	401	256	145	170.862	35644	ALL_R1	bacteria	Brachybacterium	0.0
1.7890	1.7840	624	615	9	135.993	58148	ALL_R1	bacteria	Novosphingobium	6.10e-16
1.5936	1.5891	386	290	96	121.137	35592	ALL_R1	bacteria	Brevibacterium	0.0
1.4404	1.4363	434	412	22	109.491	40180	ALL_R1	bacteria	Enterobacter	2.76e-227
1.4085	1.4046	439	424	15	107.068	40683	ALL_R1	bacteria	Rhizobium	2.81e-24
1.3124	1.3088	424	409	15	99.765	39455	ALL_R1	bacteria	Agrobacterium	6.08e-39
1.2796	1.2760	408	392	16	97.267	37939	ALL_R1	bacteria	Psychrobacter	5.91e-45
1.2669	1.2634	443	432	11	96.304	41068	ALL_R1	bacteria	Moraxella	2.42e-07
1.2643	1.2608	393	348	45	96.108	36124	ALL_R1	bacteria	Actinomyces	0.0
1.2029	1.1996	417	413	4	91.441	38766	ALL_R1	bacteria	Citrobacter	2.85e-04
1.1043	1.1012	397	389	8	83.943	36665	ALL_R1	bacteria	Stenotrophomonas	8.61e-09
1.1002	1.0971	427	414	13	83.633	39577	ALL_R1	bacteria	Burkholderia	2.56e-50
1.0771	1.0741	395	366	29	81.874	36789	ALL_R1	bacteria	Methylobacterium	4.13e-79
1.0100	1.0072	424	416	8	76.775	39420	ALL_R1	bacteria	Aeromonas	7.94e-12
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3.5170	3.5072	271	22	249	267.349	24989	ALL_R1	viral	Gammaretrovirus	0.0
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8.1236	8.0654	1110	745	365	614.813	100471	ALL_R2	bacteria	Pseudomonas	0.0
3.3472	3.3232	819	772	47	253.323	73748	ALL_R2	bacteria	Sphingomonas	1.57e-237
2.6939	2.6746	514	372	142	203.879	45497	ALL_R2	bacteria	Corynebacterium	0.0
2.6502	2.6312	378	221	157	200.576	34498	ALL_R2	bacteria	Staphylococcus	0.0
2.4115	2.3942	474	393	81	182.510	42976	ALL_R2	bacteria	Sphingobium	0.0
2.3073	2.2907	404	270	134	174.621	35270	ALL_R2	bacteria	Brachybacterium	0.0
2.1126	2.0974	536	473	63	159.884	49605	ALL_R2	bacteria	Acinetobacter	1.54e-258
1.9760	1.9619	605	600	5	149.550	54457	ALL_R2	bacteria	Novosphingobium	2.93e-04
1.7334	1.7210	383	289	94	131.186	33361	ALL_R2	bacteria	Brevibacterium	0.0
1.3675	1.3577	395	355	40	103.497	34431	ALL_R2	bacteria	Actinomyces	2.17e-266
1.3644	1.3547	425	411	14	103.264	38440	ALL_R2	bacteria	Rhizobium	4.32e-19
1.2115	1.2029	406	392	14	91.692	36750	ALL_R2	bacteria	Agrobacterium	8.98e-31
1.1926	1.1840	417	404	13	90.258	38507	ALL_R2	bacteria	Psychrobacter	2.38e-26
1.1599	1.1516	388	375	13	87.785	34136	ALL_R2	bacteria	Arthrobacter	4.74e-14
1.1417	1.1335	448	430	18	86.403	40566	ALL_R2	bacteria	Enterobacter	2.12e-137
1.1346	1.1265	402	369	33	85.872	35955	ALL_R2	bacteria	Methylobacterium	2.09e-94
1.1250	1.1170	467	456	11	85.145	41500	ALL_R2	bacteria	Burkholderia	1.19e-31
1.0277	1.0203	457	452	5	77.779	41327	ALL_R2	bacteria	Escherichia	1.19e-05
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3.3350	3.3111	254	17	237	252.403	21706	ALL_R2	viral	Gammaretrovirus	0.0