# 2018/01/17 23:56:23
# HUMAN	Target (Host) organism
# RNA	Sequencing source
# A3_Kawakami_1	Replication ID
# A3_Kawakami	Sample ID
# CVCL_1062_1	Read1
# CVCL_1062_2	Read2
R1	  91667724 (100.0000%)	[A] Total raw reads
R1	  82257773 (89.7347%)	[B] Total reads after QC of (A)
R1		
R1	  82257773 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R1	 156706940 (95.2536%)	[B-3] Total mapped reads of (B-2)x2
R1	   7808606 (4.7464%)	[B-4] Total unmapped reads of (B-2)x2
R1	  78447033 (95.3673%)	[F] Total mapped reads of (B-2)
R1	   3810740 (4.6327%)	[G] Total unmapped reads of (B-2)
R1	     97965 (0.1191%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R1	  82159808 (99.8809%)	[J] Total mapped reads to host genome ( (B-2)-H)
R1	      3576 (0.0043%)	[I-1] Total mapped reads of (H) to exo. genomes
R1	        43.525	[I-3] RPMH of (I-1)
R1	        43.473	[I-4] PPM of (I-1)
R1	        34 (0.0000%)	[I-5] Total chimeric reads of (I-1)
R1	         0.414	[I-7] RPMH of (I-5)
R1	         0.413	[I-8] PPM of (I-5)
R1		
## -----------------------------------------

R2	  91667724 (100.0000%)	[A] Total raw reads
R2	  82257773 (89.7347%)	[B] Total reads after QC of (A)
R2		
R2	  82257773 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R2	 156706940 (95.2536%)	[B-3] Total mapped reads of (B-2)x2
R2	   7808606 (4.7464%)	[B-4] Total unmapped reads of (B-2)x2
R2	  78259907 (95.1398%)	[F] Total mapped reads of (B-2)
R2	   3997866 (4.8602%)	[G] Total unmapped reads of (B-2)
R2	    132165 (0.1607%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R2	  82125608 (99.8393%)	[J] Total mapped reads to host genome ( (B-2)-H)
R2	      3613 (0.0044%)	[I-1] Total mapped reads of (H) to exo. genomes
R2	        43.994	[I-3] RPMH of (I-1)
R2	        43.923	[I-4] PPM of (I-1)
R2	        66 (0.0001%)	[I-5] Total chimeric reads of (I-1)
R2	         0.804	[I-7] RPMH of (I-5)
R2	         0.802	[I-8] PPM of (I-5)
R2		
## -----------------------------------------

##=============================================##
# List threshold of RPMH   > 1
# List threshold of P-value < 0.001
# RPMH	PPM	Total	Multi_Reads(All_ExoGenus)	Uniq_Reads(This_Genus)	wTotal	Sum_ReadLength	Type	Exo	Genus	Pvalue(Uniq)
7.0034	6.9951	1072	717	355	575.399	103424	ALL_R1	bacteria	Neisseria	0.0
5.1992	5.1930	866	636	230	427.162	83127	ALL_R1	bacteria	Pseudomonas	0.0
5.0153	5.0094	693	460	233	412.060	66085	ALL_R1	bacteria	Cutibacterium	0.0
2.0710	2.0686	635	600	35	170.156	60774	ALL_R1	bacteria	Sphingomonas	2.59e-198
1.9502	1.9479	641	637	4	160.228	61494	ALL_R1	bacteria	Burkholderia	1.83e-05
1.5683	1.5664	447	397	50	128.850	42733	ALL_R1	bacteria	Acinetobacter	3.46e-246
1.3555	1.3538	507	477	30	111.364	48192	ALL_R1	bacteria	Acidovorax	2.91e-118
1.3396	1.3380	297	239	58	110.063	28355	ALL_R1	bacteria	Sphingobium	0.0
1.2580	1.2565	477	473	4	103.355	45620	ALL_R1	bacteria	Ralstonia	1.01e-09
1.2122	1.2107	635	631	4	99.593	60374	ALL_R1	bacteria	Comamonas	6.31e-04
1.1541	1.1527	431	407	24	94.822	41104	ALL_R1	bacteria	Corynebacterium	6.30e-246
1.0940	1.0927	406	393	13	89.883	38630	ALL_R1	bacteria	Enterobacter	7.59e-108
<<
6.3927	6.3824	1073	896	177	525.006	103417	ALL_R2	bacteria	Neisseria	0.0
5.1918	5.1834	882	647	235	426.378	84887	ALL_R2	bacteria	Pseudomonas	0.0
5.1155	5.1073	685	381	304	420.117	65177	ALL_R2	bacteria	Cutibacterium	0.0
2.2494	2.2458	671	638	33	184.736	64080	ALL_R2	bacteria	Sphingomonas	5.70e-172
1.8998	1.8967	668	662	6	156.019	64258	ALL_R2	bacteria	Burkholderia	7.36e-13
1.6247	1.6220	467	412	55	133.426	45316	ALL_R2	bacteria	Acinetobacter	8.01e-293
1.5342	1.5317	342	284	58	125.994	32588	ALL_R2	bacteria	Sphingobium	0.0
1.3480	1.3458	526	523	3	110.704	50647	ALL_R2	bacteria	Ralstonia	4.15e-05
1.3273	1.3252	522	493	29	109.004	50315	ALL_R2	bacteria	Acidovorax	7.23e-108
1.2285	1.2265	443	420	23	100.893	42084	ALL_R2	bacteria	Corynebacterium	5.38e-220
1.0613	1.0596	416	400	16	87.163	39927	ALL_R2	bacteria	Enterobacter	1.61e-161