# 2020/06/29 16:25:35
# HUMAN	Target (Host) organism
# RNA	Sequencing source
# ERR188421	Replication ID
# ERR188421	Sample ID
# ERR188421_1	Read1
# ERR188421_2	Read2
R1	       23809312 (100.0000%)	[A] Total raw reads
R1	       23145615 (97.2124%)	[B] Total reads after QC of (A)
R1		
R1	       23145615 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R1	       41690928 (90.0623%)	[B-3] Total mapped reads of (B-2)x2
R1	        4600302 (9.9377%)	[B-4] Total unmapped reads of (B-2)x2
R1	       20947976 (90.5052%)	[F] Total mapped reads of (B-2)
R1	        2197639 (9.4948%)	[G] Total unmapped reads of (B-2)
R1	          76199 (0.3292%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R1	       23069416 (99.6708%)	[J] Total mapped reads to host genome ( (B-2)-H)
R1	          45581 (0.1969%)	[I-1] Total mapped reads of (H) to exo. genomes
R1	      1975.819	[I-3] RPMH of (I-1)
R1	      1969.315	[I-4] PPM of (I-1)
R1	    598183.703	[I-5] RPMU of (I-1)
R1	            222 (0.0010%)	[I-6] Total chimeric reads of (I-1)
R1	         9.623	[I-7] RPMH of (I-6)
R1	         9.591	[I-8] PPM of (I-6)
R1	      2913.424	[I-9] RPMU of (I-6)
R1		
## -----------------------------------------

R2	       23809312 (100.0000%)	[A] Total raw reads
R2	       23145615 (97.2124%)	[B] Total reads after QC of (A)
R2		
R2	       23145615 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R2	       41690928 (90.0623%)	[B-3] Total mapped reads of (B-2)x2
R2	        4600302 (9.9377%)	[B-4] Total unmapped reads of (B-2)x2
R2	       20742952 (89.6194%)	[F] Total mapped reads of (B-2)
R2	        2402663 (10.3806%)	[G] Total unmapped reads of (B-2)
R2	         180883 (0.7815%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R2	       22964732 (99.2185%)	[J] Total mapped reads to host genome ( (B-2)-H)
R2	          45152 (0.1951%)	[I-1] Total mapped reads of (H) to exo. genomes
R2	      1966.145	[I-3] RPMH of (I-1)
R2	      1950.780	[I-4] PPM of (I-1)
R2	    249619.920	[I-5] RPMU of (I-1)
R2	            229 (0.0010%)	[I-6] Total chimeric reads of (I-1)
R2	         9.972	[I-7] RPMH of (I-6)
R2	         9.894	[I-8] PPM of (I-6)
R2	      1266.012	[I-9] RPMU of (I-6)
R2		
## -----------------------------------------

##=============================================##
# List threshold of RPMU   > 1
# List threshold of P-value < 0.001
# RPMH	PPM	RPMU	Total	Multi_Reads(All_ExoGenus)	Uniq_Reads(This_Genus)	wTotal	Sum_ReadLength	Type	Exo	Genus	Pvalue(Uniq)
110.0965	109.7340	33331.9466	3001	808	2193	2539.861	222346	ALL_R1	bacteria	Nocardia	0.0
3.9089	3.8961	1183.4407	101	14	87	90.177	7266	ALL_R1	bacteria	Escherichia	1.44e-33
<<
1755.7011	1749.9211	531542.4087	40503	0	40503	40503.000	2979486	ALL_R1	viral	Lymphocryptovirus	0.0
<<
90.1392	89.4348	11443.9887	2968	1342	1626	2070.023	216148	ALL_R2	bacteria	Nocardia	0.0
3.5448	3.5171	450.0423	90	10	80	81.405	6395	ALL_R2	bacteria	Escherichia	6.34e-28
<<
1743.4125	1729.7877	221341.9724	40037	0	40037	40037.000	2919018	ALL_R2	viral	Lymphocryptovirus	0.0
<<
0.2551	0.2543	77.2320	7	2	5	5.885	522	R1U	bacteria	Nocardia	n/a	
0.0938	0.0935	28.3993	68	67	1	2.164	4490	R1U	bacteria	Mycobacterium	n/a	
<<
0.0433	0.0432	13.1235	1	0	1	1.000	72	R1U	fungi	Trichophyton	n/a	
<<
6.0253	6.0055	1824.1709	139	0	139	139.000	10126	R1U	viral	Lymphocryptovirus	n/a	
<<
0.1507	0.1495	19.1339	5	2	3	3.461	250	R2U	bacteria	Fusobacterium	n/a	
0.1306	0.1296	16.5853	3	0	3	3.000	225	R2U	bacteria	Nocardia	n/a	
0.1038	0.1030	13.1743	7	6	1	2.383	389	R2U	bacteria	Nocardioides	n/a	
0.0871	0.0864	11.0569	3	1	2	2.000	159	R2U	bacteria	Streptomyces	n/a	
0.0871	0.0864	11.0569	2	0	2	2.000	92	R2U	bacteria	Bacillus	n/a	
0.0871	0.0864	11.0569	2	0	2	2.000	90	R2U	bacteria	Lachnoclostridium	n/a	
0.0465	0.0461	5.8988	8	7	1	1.067	504	R2U	bacteria	Paenibacillus	n/a	
0.0435	0.0432	5.5284	1	0	1	1.000	47	R2U	bacteria	Lactobacillus	n/a	
0.0435	0.0432	5.5284	1	0	1	1.000	44	R2U	bacteria	Shewanella	n/a	
0.0435	0.0432	5.5284	1	0	1	1.000	38	R2U	bacteria	Candidatus_Regiella	n/a	
<<
0.1307	0.1297	16.5908	8	5	3	3.001	506	R2U	fungi	Botrytis	n/a	
0.1081	0.1073	13.7271	7	5	2	2.483	410	R2U	fungi	Fusarium	n/a	
0.0964	0.0956	12.2344	6	4	2	2.213	337	R2U	fungi	Pestalotiopsis	n/a	
0.0871	0.0864	11.0569	3	1	2	2.000	193	R2U	fungi	Ustilago	n/a	
0.0636	0.0631	8.0770	6	5	1	1.461	324	R2U	fungi	Laccaria	n/a	
0.0636	0.0631	8.0770	5	4	1	1.461	312	R2U	fungi	Melampsora	n/a	
0.0537	0.0533	6.8221	6	5	1	1.234	323	R2U	fungi	Trichoderma	n/a	
0.0528	0.0524	6.7005	7	6	1	1.212	377	R2U	fungi	Talaromyces	n/a	
0.0528	0.0524	6.7005	5	4	1	1.212	291	R2U	fungi	Phycomyces	n/a	
0.0436	0.0432	5.5340	3	2	1	1.001	166	R2U	fungi	Scedosporium	n/a	
0.0435	0.0432	5.5284	6	5	1	1.000	325	R2U	fungi	Neofusicoccum	n/a	
0.0435	0.0432	5.5284	5	4	1	1.000	299	R2U	fungi	Cryptococcus	n/a	
0.0435	0.0432	5.5284	5	4	1	1.000	282	R2U	fungi	Phanerochaete	n/a	
0.0435	0.0432	5.5284	5	4	1	1.000	279	R2U	fungi	Trichosporon	n/a	
0.0435	0.0432	5.5284	5	4	1	1.000	266	R2U	fungi	Dactylellina	n/a	
0.0435	0.0432	5.5284	4	3	1	1.000	243	R2U	fungi	Paracoccidioides	n/a	
0.0435	0.0432	5.5284	4	3	1	1.000	239	R2U	fungi	Lodderomyces	n/a	
0.0435	0.0432	5.5284	4	3	1	1.000	228	R2U	fungi	Microsporum	n/a	
0.0435	0.0432	5.5284	4	3	1	1.000	220	R2U	fungi	Trichophyton	n/a	
0.0435	0.0432	5.5284	3	2	1	1.000	191	R2U	fungi	Histoplasma	n/a	
0.0435	0.0432	5.5284	3	2	1	1.000	187	R2U	fungi	Moesziomyces	n/a	
0.0435	0.0432	5.5284	3	2	1	1.000	165	R2U	fungi	Uncinocarpus	n/a	
0.0435	0.0432	5.5284	3	2	1	1.000	161	R2U	fungi	Vanderwaltozyma	n/a	
0.0435	0.0432	5.5284	2	1	1	1.000	127	R2U	fungi	Beauveria	n/a	
0.0435	0.0432	5.5284	2	1	1	1.000	117	R2U	fungi	Malassezia	n/a	
0.0435	0.0432	5.5284	1	0	1	1.000	74	R2U	fungi	Nosema	n/a	
0.0435	0.0432	5.5284	1	0	1	1.000	55	R2U	fungi	Cladophialophora	n/a	
<<
6.2705	6.2215	796.0947	144	0	144	144.000	10068	R2U	viral	Lymphocryptovirus	n/a	
0.0435	0.0432	5.5284	1	0	1	1.000	52	R2U	viral	Pestivirus	n/a