# 2020/07/08 09:09:41 # HUMAN Target (Host) organism # RNA Sequencing source # ERR188255 Replication ID # ERR188255 Sample ID # ERR188255_1 Read1 # ERR188255_2 Read2 R1 21815539 (100.0000%) [A] Total raw reads R1 21273959 (97.5175%) [B] Total reads after QC of (A) R1 R1 21273959 (100.0000%) [B-2] Total reads of (B) passed to HISAT2 R1 38617032 (90.7613%) [B-3] Total mapped reads of (B-2)x2 R1 3930886 (9.2387%) [B-4] Total unmapped reads of (B-2)x2 R1 19385961 (91.1253%) [F] Total mapped reads of (B-2) R1 1887998 (8.8747%) [G] Total unmapped reads of (B-2) R1 154413 (0.7258%) [H] Total unmapped reads of (B-2) after running BLASTn with (G) R1 21119546 (99.2742%) [J] Total mapped reads to host genome ( (B-2)-H) R1 107557 (0.5056%) [I-1] Total mapped reads of (H) to exo. genomes R1 5092.771 [I-3] RPMH of (I-1) R1 5055.806 [I-4] PPM of (I-1) R1 696554.047 [I-5] RPMU of (I-1) R1 137 (0.0006%) [I-6] Total chimeric reads of (I-1) R1 6.487 [I-7] RPMH of (I-6) R1 6.440 [I-8] PPM of (I-6) R1 887.231 [I-9] RPMU of (I-6) R1 ## ----------------------------------------- R2 21815539 (100.0000%) [A] Total raw reads R2 21273959 (97.5175%) [B] Total reads after QC of (A) R2 R2 21273959 (100.0000%) [B-2] Total reads of (B) passed to HISAT2 R2 38617032 (90.7613%) [B-3] Total mapped reads of (B-2)x2 R2 3930886 (9.2387%) [B-4] Total unmapped reads of (B-2)x2 R2 19231071 (90.3972%) [F] Total mapped reads of (B-2) R2 2042888 (9.6028%) [G] Total unmapped reads of (B-2) R2 203131 (0.9548%) [H] Total unmapped reads of (B-2) after running BLASTn with (G) R2 21070828 (99.0452%) [J] Total mapped reads to host genome ( (B-2)-H) R2 107203 (0.5039%) [I-1] Total mapped reads of (H) to exo. genomes R2 5087.745 [I-3] RPMH of (I-1) R2 5039.166 [I-4] PPM of (I-1) R2 527753.026 [I-5] RPMU of (I-1) R2 181 (0.0009%) [I-6] Total chimeric reads of (I-1) R2 8.590 [I-7] RPMH of (I-6) R2 8.508 [I-8] PPM of (I-6) R2 891.051 [I-9] RPMU of (I-6) R2 ## ----------------------------------------- ##=============================================## # List threshold of RPMU > 1 # List threshold of P-value < 0.001 # RPMH PPM RPMU Total Multi_Reads(All_ExoGenus) Uniq_Reads(This_Genus) wTotal Sum_ReadLength Type Exo Genus Pvalue(Uniq) 700.1723 695.0902 95764.7413 16608 3002 13606 14787.321 1229322 ALL_R1 bacteria Nocardia 0.0 6.2044 6.1594 848.6008 216 96 120 131.035 15753 ALL_R1 bacteria Bradyrhizobium 5.01e-41 << 4236.0477 4205.3012 579377.4164 89464 1 89463 89463.405 6556447 ALL_R1 viral Lymphocryptovirus 0.0 << 446.1634 441.9033 46280.6366 16575 10717 5858 9401.032 1218343 ALL_R2 bacteria Nocardia 0.0 5.5939 5.5405 580.2610 210 104 106 117.869 15230 ALL_R2 bacteria Bradyrhizobium 1.99e-28 << 4228.5002 4188.1250 438623.3514 89098 0 89098 89098.000 6508645 ALL_R2 viral Lymphocryptovirus 0.0 << 0.2751 0.2731 37.6264 7 2 5 5.810 524 R1U bacteria Nocardia n/a 0.0981 0.0974 13.4186 19 17 2 2.072 1266 R1U bacteria Paenibacillus n/a 0.0473 0.0470 6.4761 1 0 1 1.000 44 R1U bacteria Fusobacterium n/a << 0.0473 0.0470 6.4761 1 0 1 1.000 69 R1U fungi Diplodia n/a 0.0473 0.0470 6.4761 1 0 1 1.000 45 R1U fungi Coccidioides n/a << 4.8770 4.8416 667.0423 103 0 103 103.000 7480 R1U viral Lymphocryptovirus n/a << 0.4816 0.4770 49.9579 21 16 5 10.148 1543 R2U bacteria Nocardia n/a 0.1109 0.1098 11.5000 4 3 1 2.336 266 R2U bacteria Spirochaeta n/a 0.0949 0.0940 9.8459 2 0 2 2.000 104 R2U bacteria Fusobacterium n/a 0.0478 0.0473 4.9574 3 2 1 1.007 154 R2U bacteria Mycobacterium n/a 0.0478 0.0473 4.9574 3 2 1 1.007 139 R2U bacteria Paenibacillus n/a 0.0475 0.0470 4.9229 1 0 1 1.000 37 R2U bacteria Bacillus n/a 0.0475 0.0470 4.9229 1 0 1 1.000 36 R2U bacteria Clostridioides n/a << 0.2584 0.2559 26.8054 7 2 5 5.445 357 R2U fungi Aspergillus n/a 0.1160 0.1149 12.0366 3 1 2 2.445 146 R2U fungi Auricularia n/a 0.0780 0.0772 8.0884 4 3 1 1.643 167 R2U fungi Leptosphaeria n/a 0.0728 0.0721 7.5469 4 3 1 1.533 197 R2U fungi Penicillium n/a 0.0686 0.0679 7.1136 3 2 1 1.445 123 R2U fungi Pestalotiopsis n/a 0.0686 0.0679 7.1136 3 2 1 1.445 112 R2U fungi Phycomyces n/a 0.0569 0.0563 5.8977 2 1 1 1.198 85 R2U fungi Melampsora n/a 0.0569 0.0563 5.8977 2 1 1 1.198 85 R2U fungi Exophiala n/a 0.0516 0.0511 5.3561 2 1 1 1.088 143 R2U fungi Trichoderma n/a 0.0475 0.0470 4.9229 2 1 1 1.000 95 R2U fungi Microsporum n/a 0.0475 0.0470 4.9229 2 1 1 1.000 90 R2U fungi Malassezia n/a 0.0475 0.0470 4.9229 1 0 1 1.000 67 R2U fungi Pseudogymnoascus n/a 0.0475 0.0470 4.9229 1 0 1 1.000 52 R2U fungi Ogataea n/a 0.0475 0.0470 4.9229 1 0 1 1.000 50 R2U fungi Pneumocystis n/a 0.0475 0.0470 4.9229 1 0 1 1.000 49 R2U fungi Coprinopsis n/a 0.0475 0.0470 4.9229 1 0 1 1.000 44 R2U fungi Pochonia n/a 0.0475 0.0470 4.9229 1 0 1 1.000 37 R2U fungi Aureobasidium n/a 0.0475 0.0470 4.9229 1 0 1 1.000 36 R2U fungi Enterocytozoon n/a 0.0475 0.0470 4.9229 1 0 1 1.000 36 R2U fungi Chaetomium n/a << 5.0781 5.0296 526.7537 107 0 107 107.000 7588 R2U viral Lymphocryptovirus n/a 0.0475 0.0470 4.9229 1 0 1 1.000 68 R2U viral Gammaretrovirus n/a