# 2020/06/01 15:12:35
# HUMAN	Target (Host) organism
# DNA	Sequencing source
# SRR190845	Replication ID
# SRP001294	Sample ID
# SRR190845_1.filt	Read1
# SRR190845_2.filt	Read2
R1	      104589640 (100.0000%)	[A] Total raw reads
R1	       94171060 (90.0386%)	[B] Total reads after QC of (A)
R1		
R1	       94171060 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R1	      174032786 (92.4025%)	[B-3] Total mapped reads of (B-2)x2
R1	       14309334 (7.5975%)	[B-4] Total unmapped reads of (B-2)x2
R1	       87157228 (92.5520%)	[F] Total mapped reads of (B-2)
R1	        7013832 (7.4480%)	[G] Total unmapped reads of (B-2)
R1	        1508983 (1.6024%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R1	       92662077 (98.3976%)	[J] Total mapped reads to host genome ( (B-2)-H)
R1	         427235 (0.4537%)	[I-1] Total mapped reads of (H) to exo. genomes
R1	      4610.678	[I-3] RPMH of (I-1)
R1	      4536.797	[I-4] PPM of (I-1)
R1	    283127.775	[I-5] RPMU of (I-1)
R1	           1568 (0.0017%)	[I-6] Total chimeric reads of (I-1)
R1	        16.922	[I-7] RPMH of (I-6)
R1	        16.651	[I-8] PPM of (I-6)
R1	      1039.110	[I-9] RPMU of (I-6)
R1		
## -----------------------------------------

R2	      104589640 (100.0000%)	[A] Total raw reads
R2	       94171060 (90.0386%)	[B] Total reads after QC of (A)
R2		
R2	       94171060 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R2	      174032786 (92.4025%)	[B-3] Total mapped reads of (B-2)x2
R2	       14309334 (7.5975%)	[B-4] Total unmapped reads of (B-2)x2
R2	       86875558 (92.2529%)	[F] Total mapped reads of (B-2)
R2	        7295502 (7.7471%)	[G] Total unmapped reads of (B-2)
R2	        1543528 (1.6391%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R2	       92627532 (98.3609%)	[J] Total mapped reads to host genome ( (B-2)-H)
R2	         424373 (0.4506%)	[I-1] Total mapped reads of (H) to exo. genomes
R2	      4581.500	[I-3] RPMH of (I-1)
R2	      4506.406	[I-4] PPM of (I-1)
R2	    274937.027	[I-5] RPMU of (I-1)
R2	           1114 (0.0012%)	[I-6] Total chimeric reads of (I-1)
R2	        12.027	[I-7] RPMH of (I-6)
R2	        11.830	[I-8] PPM of (I-6)
R2	       721.723	[I-9] RPMU of (I-6)
R2		
## -----------------------------------------

##=============================================##
# List threshold of RPMU   > 1
# List threshold of P-value < 0.001
# RPMH	PPM	RPMU	Total	Multi_Reads(All_ExoGenus)	Uniq_Reads(This_Genus)	wTotal	Sum_ReadLength	Type	Exo	Genus	Pvalue(Uniq)
4605.1418	4531.3497	282787.8114	426722	0	426722	426722.000	39249405	ALL_R1	viral	Lymphocryptovirus	0.0
<<
4575.7493	4500.7497	274591.9530	423841	1	423840	423840.368	38273434	ALL_R2	viral	Lymphocryptovirus	0.0
<<
0.0227	0.0223	1.3943	4	3	1	2.104	303	R1U	bacteria	Alcanivorax	n/a	
<<
16.8462	16.5762	1034.4716	1561	0	1561	1561.000	140303	R1U	viral	Lymphocryptovirus	n/a	
<<
0.0267	0.0263	1.6015	5	4	1	2.472	360	R2U	bacteria	Alcanivorax	n/a	
0.0267	0.0263	1.6015	5	4	1	2.472	349	R2U	bacteria	Tetrasphaera	n/a	
<<
11.9511	11.7552	717.1882	1107	0	1107	1107.000	98199	R2U	viral	Lymphocryptovirus	n/a