# 2020/05/24 21:01:03
# HUMAN	Target (Host) organism
# DNA	Sequencing source
# SRR043411	Replication ID
# SRP001294	Sample ID
# SRR043411_1.filt	Read1
# SRR043411_2.filt	Read2
R1	       22880374 (100.0000%)	[A] Total raw reads
R1	       20478424 (89.5021%)	[B] Total reads after QC of (A)
R1		
R1	       20478424 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R1	       36120812 (88.1924%)	[B-3] Total mapped reads of (B-2)x2
R1	        4836036 (11.8076%)	[B-4] Total unmapped reads of (B-2)x2
R1	       18071680 (88.2474%)	[F] Total mapped reads of (B-2)
R1	        2406744 (11.7526%)	[G] Total unmapped reads of (B-2)
R1	        1232719 (6.0196%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R1	       19245705 (93.9804%)	[J] Total mapped reads to host genome ( (B-2)-H)
R1	          18119 (0.0885%)	[I-1] Total mapped reads of (H) to exo. genomes
R1	       941.457	[I-3] RPMH of (I-1)
R1	       884.785	[I-4] PPM of (I-1)
R1	     14698.402	[I-5] RPMU of (I-1)
R1	            160 (0.0008%)	[I-6] Total chimeric reads of (I-1)
R1	         8.314	[I-7] RPMH of (I-6)
R1	         7.813	[I-8] PPM of (I-6)
R1	       129.794	[I-9] RPMU of (I-6)
R1		
## -----------------------------------------

R2	       22880374 (100.0000%)	[A] Total raw reads
R2	       20478424 (89.5021%)	[B] Total reads after QC of (A)
R2		
R2	       20478424 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R2	       36120812 (88.1924%)	[B-3] Total mapped reads of (B-2)x2
R2	        4836036 (11.8076%)	[B-4] Total unmapped reads of (B-2)x2
R2	       18049132 (88.1373%)	[F] Total mapped reads of (B-2)
R2	        2429292 (11.8627%)	[G] Total unmapped reads of (B-2)
R2	        1232624 (6.0191%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R2	       19245800 (93.9809%)	[J] Total mapped reads to host genome ( (B-2)-H)
R2	          17933 (0.0876%)	[I-1] Total mapped reads of (H) to exo. genomes
R2	       931.788	[I-3] RPMH of (I-1)
R2	       875.702	[I-4] PPM of (I-1)
R2	     14548.638	[I-5] RPMU of (I-1)
R2	             81 (0.0004%)	[I-6] Total chimeric reads of (I-1)
R2	         4.209	[I-7] RPMH of (I-6)
R2	         3.955	[I-8] PPM of (I-6)
R2	        65.714	[I-9] RPMU of (I-6)
R2		
## -----------------------------------------

##=============================================##
# List threshold of RPMU   > 1
# List threshold of P-value < 0.001
# RPMH	PPM	RPMU	Total	Multi_Reads(All_ExoGenus)	Uniq_Reads(This_Genus)	wTotal	Sum_ReadLength	Type	Exo	Genus	Pvalue(Uniq)
2.7800	2.6127	43.4032	55	2	53	53.504	3682	ALL_R1	bacteria	Bradyrhizobium	3.41e-30
<<
935.1697	878.8762	14600.2455	17998	0	17998	17998.000	1262499	ALL_R1	viral	Lymphocryptovirus	0.0
<<
2.7048	2.5420	42.2327	59	11	48	52.057	3942	ALL_R2	bacteria	Bradyrhizobium	8.72e-25
<<
925.6565	869.9400	14452.9070	17815	0	17815	17815.000	1255003	ALL_R2	viral	Lymphocryptovirus	0.0
<<
8.3135	7.8131	129.7944	160	0	160	160.000	11099	R1U	viral	Lymphocryptovirus	n/a	
<<
4.2087	3.9554	65.7135	81	0	81	81.000	5764	R2U	viral	Lymphocryptovirus	n/a