# 2018/02/25 02:20:36
# HUMAN	Target (Host) organism
# RNA	Sequencing source
# ENCSR313COD_1	Replication ID
# ENCSR313COD	Sample ID
# ENCFF719YBM	Read1
# ENCFF801ZKX	Read2
R1	  46073691 (100.0000%)	[A] Total raw reads
R1	  45601459 (98.9751%)	[B] Total reads after QC of (A)
R1		
R1	  45601459 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R1	  86144021 (94.4531%)	[B-3] Total mapped reads of (B-2)x2
R1	   5058897 (5.5469%)	[B-4] Total unmapped reads of (B-2)x2
R1	  43276357 (94.9013%)	[F] Total mapped reads of (B-2)
R1	   2325102 (5.0987%)	[G] Total unmapped reads of (B-2)
R1	    909091 (1.9936%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R1	  44692368 (98.0064%)	[J] Total mapped reads to host genome ( (B-2)-H)
R1	    717855 (1.5742%)	[I-1] Total mapped reads of (H) to exo. genomes
R1	     16062.138	[I-3] RPMH of (I-1)
R1	     15741.931	[I-4] PPM of (I-1)
R1	        95 (0.0002%)	[I-5] Total chimeric reads of (I-1)
R1	         2.126	[I-7] RPMH of (I-5)
R1	         2.083	[I-8] PPM of (I-5)
R1		
## -----------------------------------------

R2	  46073691 (100.0000%)	[A] Total raw reads
R2	  45601459 (98.9751%)	[B] Total reads after QC of (A)
R2		
R2	  45601459 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R2	  86144021 (94.4531%)	[B-3] Total mapped reads of (B-2)x2
R2	   5058897 (5.5469%)	[B-4] Total unmapped reads of (B-2)x2
R2	  42867664 (94.0050%)	[F] Total mapped reads of (B-2)
R2	   2733795 (5.9950%)	[G] Total unmapped reads of (B-2)
R2	   1138399 (2.4964%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R2	  44463060 (97.5036%)	[J] Total mapped reads to host genome ( (B-2)-H)
R2	    715013 (1.5680%)	[I-1] Total mapped reads of (H) to exo. genomes
R2	     16081.057	[I-3] RPMH of (I-1)
R2	     15679.608	[I-4] PPM of (I-1)
R2	       122 (0.0003%)	[I-5] Total chimeric reads of (I-1)
R2	         2.744	[I-7] RPMH of (I-5)
R2	         2.675	[I-8] PPM of (I-5)
R2		
## -----------------------------------------

##=============================================##
# List threshold of RPMH   > 1
# List threshold of P-value < 0.001
# RPMH	PPM	Total	Multi_Reads(All_ExoGenus)	Uniq_Reads(This_Genus)	wTotal	Sum_ReadLength	Type	Exo	Genus	Pvalue(Uniq)
5616.1091	5504.1488	630499	624049	6450	250997.215	63526928	ALL_R1	bacteria	Pseudomonas	0.0
1629.2669	1596.7865	74879	2590	72289	72815.795	7547273	ALL_R1	bacteria	Bacillus	0.0
14.4295	14.1419	1315	923	392	644.890	132563	ALL_R1	bacteria	Cutibacterium	5.11e-11
<<
6090.8488	5938.7963	630711	624255	6456	270817.777	63450895	ALL_R2	bacteria	Pseudomonas	0.0
1622.4469	1581.9440	74666	2729	71937	72138.954	7526538	ALL_R2	bacteria	Bacillus	0.0
<<
5860.3562	5714.0577	613683	613678	5	260569.368	61737904	ALL_R2	viral	Phix174microvirus	n/a