# 2020/05/22 08:47:04
# HUMAN	Target (Host) organism
# DNA	Sequencing source
# ERR016231	Replication ID
# SRP000808	Sample ID
# ERR016231_1.filt	Read1
# ERR016231_2.filt	Read2
R1	       31596577 (100.0000%)	[A] Total raw reads
R1	       25804349 (81.6682%)	[B] Total reads after QC of (A)
R1		
R1	       25804349 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R1	       46470638 (90.0442%)	[B-3] Total mapped reads of (B-2)x2
R1	        5138060 (9.9558%)	[B-4] Total unmapped reads of (B-2)x2
R1	       22792750 (88.3291%)	[F] Total mapped reads of (B-2)
R1	        3011599 (11.6709%)	[G] Total unmapped reads of (B-2)
R1	         380058 (1.4728%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R1	       25424291 (98.5272%)	[J] Total mapped reads to host genome ( (B-2)-H)
R1	          12498 (0.0484%)	[I-1] Total mapped reads of (H) to exo. genomes
R1	       491.577	[I-3] RPMH of (I-1)
R1	       484.337	[I-4] PPM of (I-1)
R1	     32884.454	[I-5] RPMU of (I-1)
R1	             52 (0.0002%)	[I-6] Total chimeric reads of (I-1)
R1	         2.045	[I-7] RPMH of (I-6)
R1	         2.015	[I-8] PPM of (I-6)
R1	       136.821	[I-9] RPMU of (I-6)
R1		
## -----------------------------------------

R2	       31596577 (100.0000%)	[A] Total raw reads
R2	       25804349 (81.6682%)	[B] Total reads after QC of (A)
R2		
R2	       25804349 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R2	       46470638 (90.0442%)	[B-3] Total mapped reads of (B-2)x2
R2	        5138060 (9.9558%)	[B-4] Total unmapped reads of (B-2)x2
R2	       23677888 (91.7593%)	[F] Total mapped reads of (B-2)
R2	        2126461 (8.2407%)	[G] Total unmapped reads of (B-2)
R2	         158162 (0.6129%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R2	       25646187 (99.3871%)	[J] Total mapped reads to host genome ( (B-2)-H)
R2	          13001 (0.0504%)	[I-1] Total mapped reads of (H) to exo. genomes
R2	       506.937	[I-3] RPMH of (I-1)
R2	       503.830	[I-4] PPM of (I-1)
R2	     82200.529	[I-5] RPMU of (I-1)
R2	             43 (0.0002%)	[I-6] Total chimeric reads of (I-1)
R2	         1.677	[I-7] RPMH of (I-6)
R2	         1.666	[I-8] PPM of (I-6)
R2	       271.873	[I-9] RPMU of (I-6)
R2		
## -----------------------------------------

##=============================================##
# List threshold of RPMU   > 1
# List threshold of P-value < 0.001
# RPMH	PPM	RPMU	Total	Multi_Reads(All_ExoGenus)	Uniq_Reads(This_Genus)	wTotal	Sum_ReadLength	Type	Exo	Genus	Pvalue(Uniq)
490.4758	483.2519	32810.7815	12470	0	12470	12470.000	1007866	ALL_R1	viral	Lymphocryptovirus	0.0
<<
0.6691	0.6650	108.5027	26	14	12	17.161	1603	ALL_R2	bacteria	Tetrasphaera	5.83e-04
<<
504.6364	501.5434	81827.4933	12942	0	12942	12942.000	808816	ALL_R2	viral	Lymphocryptovirus	0.0
<<
0.0393	0.0388	2.6312	1	0	1	1.000	81	R1U	bacteria	Eubacterium	n/a	
0.0393	0.0388	2.6312	1	0	1	1.000	59	R1U	bacteria	Tetrasphaera	n/a	
<<
1.9666	1.9377	131.5589	50	0	50	50.000	4033	R1U	viral	Lymphocryptovirus	n/a	
<<
0.0390	0.0388	6.3226	1	0	1	1.000	39	R2U	bacteria	Exiguobacterium	n/a	
0.0390	0.0388	6.3226	1	0	1	1.000	37	R2U	bacteria	Thalassotalea	n/a	
0.0390	0.0388	6.3226	1	0	1	1.000	36	R2U	bacteria	Anaerosalibacter	n/a	
<<
1.5207	1.5114	246.5826	39	0	39	39.000	2457	R2U	viral	Lymphocryptovirus	n/a