# 2020/05/25 03:32:35
# HUMAN	Target (Host) organism
# DNA	Sequencing source
# ERR016209	Replication ID
# SRP001294	Sample ID
# ERR016209_1.filt	Read1
# ERR016209_2.filt	Read2
R1	       31164325 (100.0000%)	[A] Total raw reads
R1	       26283542 (84.3386%)	[B] Total reads after QC of (A)
R1		
R1	       26283542 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R1	       46973666 (89.3595%)	[B-3] Total mapped reads of (B-2)x2
R1	        5593418 (10.6405%)	[B-4] Total unmapped reads of (B-2)x2
R1	       23222126 (88.3523%)	[F] Total mapped reads of (B-2)
R1	        3061416 (11.6477%)	[G] Total unmapped reads of (B-2)
R1	         348795 (1.3270%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R1	       25934747 (98.6730%)	[J] Total mapped reads to host genome ( (B-2)-H)
R1	           6036 (0.0230%)	[I-1] Total mapped reads of (H) to exo. genomes
R1	       232.738	[I-3] RPMH of (I-1)
R1	       229.649	[I-4] PPM of (I-1)
R1	     17305.294	[I-5] RPMU of (I-1)
R1	             46 (0.0002%)	[I-6] Total chimeric reads of (I-1)
R1	         1.774	[I-7] RPMH of (I-6)
R1	         1.750	[I-8] PPM of (I-6)
R1	       131.883	[I-9] RPMU of (I-6)
R1		
## -----------------------------------------

R2	       31164325 (100.0000%)	[A] Total raw reads
R2	       26283542 (84.3386%)	[B] Total reads after QC of (A)
R2		
R2	       26283542 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R2	       46973666 (89.3595%)	[B-3] Total mapped reads of (B-2)x2
R2	        5593418 (10.6405%)	[B-4] Total unmapped reads of (B-2)x2
R2	       23751540 (90.3666%)	[F] Total mapped reads of (B-2)
R2	        2532002 (9.6334%)	[G] Total unmapped reads of (B-2)
R2	         246748 (0.9388%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R2	       26036794 (99.0612%)	[J] Total mapped reads to host genome ( (B-2)-H)
R2	           6189 (0.0235%)	[I-1] Total mapped reads of (H) to exo. genomes
R2	       237.702	[I-3] RPMH of (I-1)
R2	       235.471	[I-4] PPM of (I-1)
R2	     25082.270	[I-5] RPMU of (I-1)
R2	             29 (0.0001%)	[I-6] Total chimeric reads of (I-1)
R2	         1.114	[I-7] RPMH of (I-6)
R2	         1.103	[I-8] PPM of (I-6)
R2	       117.529	[I-9] RPMU of (I-6)
R2		
## -----------------------------------------

##=============================================##
# List threshold of RPMU   > 1
# List threshold of P-value < 0.001
# RPMH	PPM	RPMU	Total	Multi_Reads(All_ExoGenus)	Uniq_Reads(This_Genus)	wTotal	Sum_ReadLength	Type	Exo	Genus	Pvalue(Uniq)
2.8594	2.8215	212.6149	138	102	36	74.159	11130	ALL_R1	bacteria	Alcanivorax	4.15e-81
<<
226.6072	223.6000	16849.4388	5877	0	5877	5877.000	475692	ALL_R1	viral	Lymphocryptovirus	0.0
<<
7.0061	6.9404	739.2846	347	267	80	182.417	21897	ALL_R2	bacteria	Alcanivorax	0.0
4.4044	4.3630	464.7495	262	239	23	114.676	16686	ALL_R2	bacteria	Tetrasphaera	9.52e-23
<<
222.7233	220.6324	23501.7102	5799	0	5799	5799.000	345148	ALL_R2	viral	Lymphocryptovirus	0.0
<<
0.5775	0.5699	42.9421	30	24	6	14.978	2402	R1U	bacteria	Alcanivorax	n/a	
0.0386	0.0380	2.8670	1	0	1	1.000	81	R1U	bacteria	Arthrobacter	n/a	
<<
0.5398	0.5327	40.1382	14	0	14	14.000	1134	R1U	viral	Lymphocryptovirus	n/a	
<<
0.2568	0.2543	27.0924	11	7	4	6.685	729	R2U	bacteria	Alcanivorax	n/a	
0.1799	0.1782	18.9870	9	7	2	4.685	563	R2U	bacteria	Tetrasphaera	n/a	
0.0384	0.0380	4.0527	1	0	1	1.000	37	R2U	bacteria	Actinocatenispora	n/a	
0.0384	0.0380	4.0527	1	0	1	1.000	36	R2U	bacteria	Polymorphum	n/a	
<<
0.5377	0.5327	56.7380	14	0	14	14.000	839	R2U	viral	Lymphocryptovirus	n/a