# 2020/06/02 13:15:38
# HUMAN	Target (Host) organism
# RNA	Sequencing source
# ERR188393	Replication ID
# ERR188393	Sample ID
# ERR188393_1	Read1
# ERR188393_2	Read2
R1	       39609079 (100.0000%)	[A] Total raw reads
R1	       34678842 (87.5528%)	[B] Total reads after QC of (A)
R1		
R1	       34678842 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R1	       58454112 (84.2792%)	[B-3] Total mapped reads of (B-2)x2
R1	       10903572 (15.7208%)	[B-4] Total unmapped reads of (B-2)x2
R1	       27170609 (78.3492%)	[F] Total mapped reads of (B-2)
R1	        7508233 (21.6508%)	[G] Total unmapped reads of (B-2)
R1	         387414 (1.1171%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R1	       34291428 (98.8829%)	[J] Total mapped reads to host genome ( (B-2)-H)
R1	         141806 (0.4089%)	[I-1] Total mapped reads of (H) to exo. genomes
R1	      4135.319	[I-3] RPMH of (I-1)
R1	      4089.121	[I-4] PPM of (I-1)
R1	    366032.203	[I-5] RPMU of (I-1)
R1	            257 (0.0007%)	[I-6] Total chimeric reads of (I-1)
R1	         7.495	[I-7] RPMH of (I-6)
R1	         7.411	[I-8] PPM of (I-6)
R1	       663.373	[I-9] RPMU of (I-6)
R1		
## -----------------------------------------

R2	       39609079 (100.0000%)	[A] Total raw reads
R2	       34678842 (87.5528%)	[B] Total reads after QC of (A)
R2		
R2	       34678842 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R2	       58454112 (84.2792%)	[B-3] Total mapped reads of (B-2)x2
R2	       10903572 (15.7208%)	[B-4] Total unmapped reads of (B-2)x2
R2	       31283503 (90.2092%)	[F] Total mapped reads of (B-2)
R2	        3395339 (9.7908%)	[G] Total unmapped reads of (B-2)
R2	         351039 (1.0123%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R2	       34327803 (98.9877%)	[J] Total mapped reads to host genome ( (B-2)-H)
R2	         141915 (0.4092%)	[I-1] Total mapped reads of (H) to exo. genomes
R2	      4134.112	[I-3] RPMH of (I-1)
R2	      4092.265	[I-4] PPM of (I-1)
R2	    404271.320	[I-5] RPMU of (I-1)
R2	            242 (0.0007%)	[I-6] Total chimeric reads of (I-1)
R2	         7.050	[I-7] RPMH of (I-6)
R2	         6.978	[I-8] PPM of (I-6)
R2	       689.382	[I-9] RPMU of (I-6)
R2		
## -----------------------------------------

##=============================================##
# List threshold of RPMU   > 1
# List threshold of P-value < 0.001
# RPMH	PPM	RPMU	Total	Multi_Reads(All_ExoGenus)	Uniq_Reads(This_Genus)	wTotal	Sum_ReadLength	Type	Exo	Genus	Pvalue(Uniq)
18.1449	17.9422	1606.0700	743	132	611	622.214	55009	ALL_R1	bacteria	Cutibacterium	0.0
8.9206	8.8209	789.5946	491	219	272	305.900	36420	ALL_R1	bacteria	Pseudomonas	8.88e-145
<<
23.9653	23.6976	2121.2553	6683	6315	368	821.804	497161	ALL_R1	fungi	Penicillium	0.0
<<
3823.3462	3780.6337	338418.3328	131108	0	131108	131108.000	9744805	ALL_R1	viral	Lymphocryptovirus	0.0
<<
17.6238	17.4454	1723.4210	734	138	596	604.988	54085	ALL_R2	bacteria	Cutibacterium	0.0
8.4717	8.3859	828.4379	501	237	264	290.814	37115	ALL_R2	bacteria	Pseudomonas	4.57e-134
<<
21.6732	21.4538	2119.4055	6607	6235	372	743.994	489001	ALL_R2	fungi	Penicillium	0.0
<<
3824.6549	3785.9396	374009.7254	131292	0	131292	131292.000	9720951	ALL_R2	viral	Lymphocryptovirus	0.0
<<
0.1947	0.1925	17.2348	11	5	6	6.677	823	R1U	bacteria	Fusobacterium	n/a	
0.0875	0.0865	7.7437	3	0	3	3.000	225	R1U	bacteria	Loktanella	n/a	
0.0583	0.0577	5.1624	4	2	2	2.000	300	R1U	bacteria	Mycobacterium	n/a	
0.0583	0.0577	5.1624	2	0	2	2.000	150	R1U	bacteria	Cutibacterium	n/a	
0.0489	0.0484	4.3287	6	5	1	1.677	378	R1U	bacteria	Streptomyces	n/a	
0.0489	0.0484	4.3287	2	1	1	1.677	115	R1U	bacteria	Pseudomonas	n/a	
0.0292	0.0288	2.5812	1	0	1	1.000	75	R1U	bacteria	Lachnoclostridium	n/a	
<<
0.1315	0.1301	11.6413	85	82	3	4.510	6333	R1U	fungi	Aspergillus	n/a	
0.1159	0.1147	10.2629	60	58	2	3.976	4487	R1U	fungi	Malassezia	n/a	
0.0905	0.0895	8.0095	72	71	1	3.103	5400	R1U	fungi	Parastagonospora	n/a	
0.0875	0.0865	7.7437	25	22	3	3.000	1841	R1U	fungi	Batrachochytrium	n/a	
0.0773	0.0765	6.8454	81	80	1	2.652	6070	R1U	fungi	Pestalotiopsis	n/a	
0.0687	0.0680	6.0839	67	66	1	2.357	5025	R1U	fungi	Diplodia	n/a	
0.0584	0.0578	5.1702	55	53	2	2.003	4120	R1U	fungi	Schizosaccharomyces	n/a	
0.0583	0.0577	5.1624	3	1	2	2.000	222	R1U	fungi	Rasamsonia	n/a	
0.0583	0.0577	5.1624	2	0	2	2.000	150	R1U	fungi	Gaeumannomyces	n/a	
0.0490	0.0484	4.3364	60	59	1	1.680	4499	R1U	fungi	Bipolaris	n/a	
0.0489	0.0484	4.3287	36	35	1	1.677	2700	R1U	fungi	Moesziomyces	n/a	
0.0353	0.0349	3.1259	58	57	1	1.211	4345	R1U	fungi	Stereum	n/a	
0.0296	0.0292	2.6174	69	68	1	1.014	5170	R1U	fungi	Eutypa	n/a	
0.0295	0.0291	2.6070	68	67	1	1.010	5095	R1U	fungi	Botrytis	n/a	
0.0292	0.0289	2.5890	49	48	1	1.003	3675	R1U	fungi	Eremothecium	n/a	
0.0292	0.0288	2.5812	52	51	1	1.000	3900	R1U	fungi	Gloeophyllum	n/a	
0.0292	0.0288	2.5812	50	49	1	1.000	3715	R1U	fungi	Trichosporon	n/a	
0.0292	0.0288	2.5812	47	46	1	1.000	3520	R1U	fungi	Rhodotorula	n/a	
0.0292	0.0288	2.5812	41	40	1	1.000	3075	R1U	fungi	Ustilago	n/a	
0.0292	0.0288	2.5812	24	23	1	1.000	1795	R1U	fungi	Punctularia	n/a	
0.0292	0.0288	2.5812	1	0	1	1.000	75	R1U	fungi	Tsuchiyaea	n/a	
0.0292	0.0288	2.5812	1	0	1	1.000	75	R1U	fungi	Purpureocillium	n/a	
0.0292	0.0288	2.5812	1	0	1	1.000	75	R1U	fungi	Pochonia	n/a	
0.0292	0.0288	2.5812	1	0	1	1.000	75	R1U	fungi	Nematocida	n/a	
0.0292	0.0288	2.5812	1	0	1	1.000	75	R1U	fungi	Cyphellophora	n/a	
0.0292	0.0288	2.5812	1	0	1	1.000	75	R1U	fungi	Cutaneotrichosporon	n/a	
0.0292	0.0288	2.5812	1	0	1	1.000	75	R1U	fungi	Aureobasidium	n/a	
0.0292	0.0288	2.5812	1	0	1	1.000	44	R1U	fungi	Babjeviella	n/a	
<<
2.9745	2.9413	263.2842	102	0	102	102.000	7559	R1U	viral	Lymphocryptovirus	n/a	
<<
0.3496	0.3460	34.1842	12	0	12	12.000	452	R2U	bacteria	Caballeronia	n/a	
0.1076	0.1065	10.5230	4	1	3	3.694	167	R2U	bacteria	Nocardia	n/a	
0.0583	0.0577	5.6974	2	0	2	2.000	150	R2U	bacteria	Cutibacterium	n/a	
0.0291	0.0288	2.8487	7	6	1	1.000	484	R2U	bacteria	Streptomyces	n/a	
0.0291	0.0288	2.8487	1	0	1	1.000	75	R2U	bacteria	Paenibacillus	n/a	
0.0291	0.0288	2.8487	1	0	1	1.000	75	R2U	bacteria	Myxococcus	n/a	
0.0291	0.0288	2.8487	1	0	1	1.000	73	R2U	bacteria	Tyzzerella	n/a	
0.0291	0.0288	2.8487	1	0	1	1.000	49	R2U	bacteria	Lachnoclostridium	n/a	
0.0291	0.0288	2.8487	1	0	1	1.000	47	R2U	bacteria	Shuttleworthia	n/a	
0.0291	0.0288	2.8487	1	0	1	1.000	42	R2U	bacteria	Collinsella	n/a	
<<
0.0878	0.0869	8.5888	47	44	3	3.015	3447	R2U	fungi	Colletotrichum	n/a	
0.0874	0.0865	8.5461	3	0	3	3.000	156	R2U	fungi	Auricularia	n/a	
0.0813	0.0805	7.9478	58	56	2	2.790	4253	R2U	fungi	Coccidioides	n/a	
0.0708	0.0701	6.9280	46	45	1	2.432	3364	R2U	fungi	Microsporum	n/a	
0.0680	0.0673	6.6517	36	34	2	2.335	2603	R2U	fungi	Trichosporon	n/a	
0.0616	0.0610	6.0278	40	38	2	2.116	2912	R2U	fungi	Exophiala	n/a	
0.0596	0.0590	5.8284	40	38	2	2.046	2944	R2U	fungi	Bipolaris	n/a	
0.0591	0.0585	5.7800	37	36	1	2.029	2714	R2U	fungi	Phanerochaete	n/a	
0.0588	0.0582	5.7486	50	48	2	2.018	3690	R2U	fungi	Pseudogymnoascus	n/a	
0.0522	0.0517	5.1048	59	58	1	1.792	4356	R2U	fungi	Blastomyces	n/a	
0.0522	0.0517	5.1048	59	58	1	1.792	4354	R2U	fungi	Histoplasma	n/a	
0.0423	0.0419	4.1363	53	52	1	1.452	3906	R2U	fungi	Talaromyces	n/a	
0.0393	0.0389	3.8429	46	45	1	1.349	3368	R2U	fungi	Trichoderma	n/a	
0.0389	0.0385	3.8030	6	5	1	1.335	416	R2U	fungi	Rasamsonia	n/a	
0.0389	0.0385	3.8030	36	35	1	1.335	2667	R2U	fungi	Laccaria	n/a	
0.0389	0.0385	3.8030	36	35	1	1.335	2636	R2U	fungi	Agaricus	n/a	
0.0309	0.0306	3.0225	50	49	1	1.061	3686	R2U	fungi	Pyrenophora	n/a	
0.0308	0.0305	3.0082	50	49	1	1.056	3709	R2U	fungi	Pseudocercospora	n/a	
0.0307	0.0304	3.0054	37	36	1	1.055	2734	R2U	fungi	Dactylellina	n/a	
0.0294	0.0291	2.8715	39	38	1	1.008	2855	R2U	fungi	Ogataea	n/a	
0.0292	0.0290	2.8601	41	40	1	1.004	3039	R2U	fungi	Botrytis	n/a	
0.0291	0.0288	2.8487	8	7	1	1.000	565	R2U	fungi	Yarrowia	n/a	
0.0291	0.0288	2.8487	38	37	1	1.000	2790	R2U	fungi	Sordaria	n/a	
0.0291	0.0288	2.8487	37	36	1	1.000	2733	R2U	fungi	Wickerhamomyces	n/a	
0.0291	0.0288	2.8487	35	34	1	1.000	2588	R2U	fungi	Clavispora	n/a	
0.0291	0.0288	2.8487	34	33	1	1.000	2506	R2U	fungi	Tremella	n/a	
0.0291	0.0288	2.8487	34	33	1	1.000	2486	R2U	fungi	Scedosporium	n/a	
0.0291	0.0288	2.8487	32	31	1	1.000	2333	R2U	fungi	Spizellomyces	n/a	
0.0291	0.0288	2.8487	30	29	1	1.000	2209	R2U	fungi	Postia	n/a	
0.0291	0.0288	2.8487	23	22	1	1.000	1692	R2U	fungi	Batrachochytrium	n/a	
0.0291	0.0288	2.8487	18	17	1	1.000	1315	R2U	fungi	Cladophialophora	n/a	
0.0291	0.0288	2.8487	14	13	1	1.000	1015	R2U	fungi	Fibroporia	n/a	
0.0291	0.0288	2.8487	12	11	1	1.000	836	R2U	fungi	Mixia	n/a	
0.0291	0.0288	2.8487	1	0	1	1.000	46	R2U	fungi	Tilletiaria	n/a	
0.0291	0.0288	2.8487	1	0	1	1.000	41	R2U	fungi	Isaria	n/a	
0.0291	0.0288	2.8487	1	0	1	1.000	37	R2U	fungi	Podospora	n/a	
<<
2.6509	2.6241	259.2305	91	0	91	91.000	6477	R2U	viral	Lymphocryptovirus	n/a	
0.0291	0.0288	2.8487	1	0	1	1.000	75	R2U	viral	Pestivirus	n/a	
0.0291	0.0288	2.8487	1	0	1	1.000	75	R2U	viral	Gammaretrovirus	n/a