# 2020/05/19 06:06:32
# HUMAN	Target (Host) organism
# DNA	Sequencing source
# SRR101478	Replication ID
# SRP001294	Sample ID
# SRR101478_1.filt	Read1
# SRR101478_2.filt	Read2
R1	       22515118 (100.0000%)	[A] Total raw reads
R1	       19675942 (87.3899%)	[B] Total reads after QC of (A)
R1		
R1	       19675942 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R1	       35260402 (89.6028%)	[B-3] Total mapped reads of (B-2)x2
R1	        4091482 (10.3972%)	[B-4] Total unmapped reads of (B-2)x2
R1	       17645355 (89.6798%)	[F] Total mapped reads of (B-2)
R1	        2030587 (10.3202%)	[G] Total unmapped reads of (B-2)
R1	         885611 (4.5010%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R1	       18790331 (95.4990%)	[J] Total mapped reads to host genome ( (B-2)-H)
R1	          13541 (0.0688%)	[I-1] Total mapped reads of (H) to exo. genomes
R1	       720.637	[I-3] RPMH of (I-1)
R1	       688.201	[I-4] PPM of (I-1)
R1	     15290.009	[I-5] RPMU of (I-1)
R1	            154 (0.0008%)	[I-6] Total chimeric reads of (I-1)
R1	         8.196	[I-7] RPMH of (I-6)
R1	         7.827	[I-8] PPM of (I-6)
R1	       173.891	[I-9] RPMU of (I-6)
R1		
## -----------------------------------------

R2	       22515118 (100.0000%)	[A] Total raw reads
R2	       19675942 (87.3899%)	[B] Total reads after QC of (A)
R2		
R2	       19675942 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R2	       35260402 (89.6028%)	[B-3] Total mapped reads of (B-2)x2
R2	        4091482 (10.3972%)	[B-4] Total unmapped reads of (B-2)x2
R2	       17615047 (89.5258%)	[F] Total mapped reads of (B-2)
R2	        2060895 (10.4742%)	[G] Total unmapped reads of (B-2)
R2	         884901 (4.4974%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R2	       18791041 (95.5026%)	[J] Total mapped reads to host genome ( (B-2)-H)
R2	          13468 (0.0684%)	[I-1] Total mapped reads of (H) to exo. genomes
R2	       716.724	[I-3] RPMH of (I-1)
R2	       684.491	[I-4] PPM of (I-1)
R2	     15219.782	[I-5] RPMU of (I-1)
R2	            127 (0.0006%)	[I-6] Total chimeric reads of (I-1)
R2	         6.759	[I-7] RPMH of (I-6)
R2	         6.455	[I-8] PPM of (I-6)
R2	       143.519	[I-9] RPMU of (I-6)
R2		
## -----------------------------------------

##=============================================##
# List threshold of RPMU   > 1
# List threshold of P-value < 0.001
# RPMH	PPM	RPMU	Total	Multi_Reads(All_ExoGenus)	Uniq_Reads(This_Genus)	wTotal	Sum_ReadLength	Type	Exo	Genus	Pvalue(Uniq)
716.8244	684.5603	15209.1245	13470	1	13469	13469.368	941192	ALL_R1	viral	Lymphocryptovirus	0.0
<<
714.0637	681.9496	15163.2782	13418	0	13418	13418.000	941227	ALL_R2	viral	Lymphocryptovirus	0.0
<<
8.1621	7.7947	173.1776	154	1	153	153.368	10610	R1U	viral	Lymphocryptovirus	n/a	
<<
6.7053	6.4038	142.3888	126	0	126	126.000	8814	R2U	viral	Lymphocryptovirus	n/a