# 2020/05/18 21:27:34
# HUMAN	Target (Host) organism
# DNA	Sequencing source
# SRR101464	Replication ID
# SRP001294	Sample ID
# SRR101464_1.filt	Read1
# SRR101464_2.filt	Read2
R1	       21830544 (100.0000%)	[A] Total raw reads
R1	       19238991 (88.1288%)	[B] Total reads after QC of (A)
R1		
R1	       19238991 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R1	       34556136 (89.8076%)	[B-3] Total mapped reads of (B-2)x2
R1	        3921846 (10.1924%)	[B-4] Total unmapped reads of (B-2)x2
R1	       17290999 (89.8748%)	[F] Total mapped reads of (B-2)
R1	        1947992 (10.1252%)	[G] Total unmapped reads of (B-2)
R1	         831281 (4.3208%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R1	       18407710 (95.6792%)	[J] Total mapped reads to host genome ( (B-2)-H)
R1	          13800 (0.0717%)	[I-1] Total mapped reads of (H) to exo. genomes
R1	       749.686	[I-3] RPMH of (I-1)
R1	       717.293	[I-4] PPM of (I-1)
R1	     16600.885	[I-5] RPMU of (I-1)
R1	            196 (0.0010%)	[I-6] Total chimeric reads of (I-1)
R1	        10.648	[I-7] RPMH of (I-6)
R1	        10.188	[I-8] PPM of (I-6)
R1	       235.781	[I-9] RPMU of (I-6)
R1		
## -----------------------------------------

R2	       21830544 (100.0000%)	[A] Total raw reads
R2	       19238991 (88.1288%)	[B] Total reads after QC of (A)
R2		
R2	       19238991 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R2	       34556136 (89.8076%)	[B-3] Total mapped reads of (B-2)x2
R2	        3921846 (10.1924%)	[B-4] Total unmapped reads of (B-2)x2
R2	       17265137 (89.7403%)	[F] Total mapped reads of (B-2)
R2	        1973854 (10.2597%)	[G] Total unmapped reads of (B-2)
R2	         830993 (4.3193%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R2	       18407998 (95.6807%)	[J] Total mapped reads to host genome ( (B-2)-H)
R2	          13707 (0.0712%)	[I-1] Total mapped reads of (H) to exo. genomes
R2	       744.622	[I-3] RPMH of (I-1)
R2	       712.459	[I-4] PPM of (I-1)
R2	     16494.724	[I-5] RPMU of (I-1)
R2	            114 (0.0006%)	[I-6] Total chimeric reads of (I-1)
R2	         6.193	[I-7] RPMH of (I-6)
R2	         5.926	[I-8] PPM of (I-6)
R2	       137.185	[I-9] RPMU of (I-6)
R2		
## -----------------------------------------

##=============================================##
# List threshold of RPMU   > 1
# List threshold of P-value < 0.001
# RPMH	PPM	RPMU	Total	Multi_Reads(All_ExoGenus)	Uniq_Reads(This_Genus)	wTotal	Sum_ReadLength	Type	Exo	Genus	Pvalue(Uniq)
745.5572	713.3430	16509.4595	13724	0	13724	13724.000	962650	ALL_R1	viral	Lymphocryptovirus	0.0
<<
740.7650	708.7690	16409.2838	13636	0	13636	13636.000	968175	ALL_R2	viral	Lymphocryptovirus	0.0
<<
0.0744	0.0712	1.6469	2	1	1	1.369	147	R1U	bacteria	Alcanivorax	n/a	
<<
10.5391	10.0837	233.3748	194	0	194	194.000	13513	R1U	viral	Lymphocryptovirus	n/a	
<<
0.0543	0.0520	1.2034	1	0	1	1.000	76	R2U	bacteria	Bradyrhizobium	n/a	
<<
6.0843	5.8215	134.7785	112	0	112	112.000	7890	R2U	viral	Lymphocryptovirus	n/a