# 2020/05/18 11:18:59
# HUMAN	Target (Host) organism
# DNA	Sequencing source
# SRR038563	Replication ID
# SRP001294	Sample ID
# SRR038563_1.filt	Read1
# SRR038563_2.filt	Read2
R1	       18062762 (100.0000%)	[A] Total raw reads
R1	       16314215 (90.3196%)	[B] Total reads after QC of (A)
R1		
R1	       16314215 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R1	       28496349 (87.3359%)	[B-3] Total mapped reads of (B-2)x2
R1	        4132081 (12.6641%)	[B-4] Total unmapped reads of (B-2)x2
R1	       14262063 (87.4211%)	[F] Total mapped reads of (B-2)
R1	        2052152 (12.5789%)	[G] Total unmapped reads of (B-2)
R1	        1112124 (6.8169%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R1	       15202091 (93.1831%)	[J] Total mapped reads to host genome ( (B-2)-H)
R1	          17938 (0.1100%)	[I-1] Total mapped reads of (H) to exo. genomes
R1	      1179.969	[I-3] RPMH of (I-1)
R1	      1099.532	[I-4] PPM of (I-1)
R1	     16129.496	[I-5] RPMU of (I-1)
R1	            203 (0.0012%)	[I-6] Total chimeric reads of (I-1)
R1	        13.353	[I-7] RPMH of (I-6)
R1	        12.443	[I-8] PPM of (I-6)
R1	       182.534	[I-9] RPMU of (I-6)
R1		
## -----------------------------------------

R2	       18062762 (100.0000%)	[A] Total raw reads
R2	       16314215 (90.3196%)	[B] Total reads after QC of (A)
R2		
R2	       16314215 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R2	       28496349 (87.3359%)	[B-3] Total mapped reads of (B-2)x2
R2	        4132081 (12.6641%)	[B-4] Total unmapped reads of (B-2)x2
R2	       14234286 (87.2508%)	[F] Total mapped reads of (B-2)
R2	        2079929 (12.7492%)	[G] Total unmapped reads of (B-2)
R2	        1110792 (6.8087%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R2	       15203423 (93.1913%)	[J] Total mapped reads to host genome ( (B-2)-H)
R2	          17901 (0.1097%)	[I-1] Total mapped reads of (H) to exo. genomes
R2	      1177.432	[I-3] RPMH of (I-1)
R2	      1097.264	[I-4] PPM of (I-1)
R2	     16115.528	[I-5] RPMU of (I-1)
R2	            126 (0.0008%)	[I-6] Total chimeric reads of (I-1)
R2	         8.288	[I-7] RPMH of (I-6)
R2	         7.723	[I-8] PPM of (I-6)
R2	       113.433	[I-9] RPMU of (I-6)
R2		
## -----------------------------------------

##=============================================##
# List threshold of RPMU   > 1
# List threshold of P-value < 0.001
# RPMH	PPM	RPMU	Total	Multi_Reads(All_ExoGenus)	Uniq_Reads(This_Genus)	wTotal	Sum_ReadLength	Type	Exo	Genus	Pvalue(Uniq)
1.9734	1.8389	26.9754	30	0	30	30.000	2279	ALL_R1	bacteria	Eubacterium	4.84e-05
1.7346	1.6163	23.7105	27	1	26	26.369	1946	ALL_R1	bacteria	Bradyrhizobium	3.79e-05
<<
1171.1547	1091.3182	16009.0062	17804	0	17804	17804.000	1295154	ALL_R1	viral	Lymphocryptovirus	0.0
<<
1.6272	1.5164	22.2715	26	2	24	24.739	1759	ALL_R2	bacteria	Bradyrhizobium	2.25e-04
<<
1169.4735	1089.8471	16006.5971	17780	0	17780	17780.000	1252902	ALL_R2	viral	Lymphocryptovirus	0.0
<<
13.0245	12.1367	178.0377	198	0	198	198.000	14502	R1U	viral	Lymphocryptovirus	n/a	
<<
8.2876	7.7233	113.4326	126	0	126	126.000	8959	R2U	viral	Lymphocryptovirus	n/a