# 2020/05/14 20:09:07
# HUMAN	Target (Host) organism
# DNA	Sequencing source
# ERR244823	Replication ID
# SRP000540	Sample ID
# ERR244823_1.filt	Read1
# ERR244823_2.filt	Read2
R1	        2748577 (100.0000%)	[A] Total raw reads
R1	        2698178 (98.1664%)	[B] Total reads after QC of (A)
R1		
R1	        2698178 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R1	        4927828 (91.3177%)	[B-3] Total mapped reads of (B-2)x2
R1	         468528 (8.6823%)	[B-4] Total unmapped reads of (B-2)x2
R1	        2483975 (92.0612%)	[F] Total mapped reads of (B-2)
R1	         214203 (7.9388%)	[G] Total unmapped reads of (B-2)
R1	          22821 (0.8458%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R1	        2675357 (99.1542%)	[J] Total mapped reads to host genome ( (B-2)-H)
R1	           2876 (0.1066%)	[I-1] Total mapped reads of (H) to exo. genomes
R1	      1074.997	[I-3] RPMH of (I-1)
R1	      1065.904	[I-4] PPM of (I-1)
R1	    126024.276	[I-5] RPMU of (I-1)
R1	             11 (0.0004%)	[I-6] Total chimeric reads of (I-1)
R1	         4.112	[I-7] RPMH of (I-6)
R1	         4.077	[I-8] PPM of (I-6)
R1	       482.012	[I-9] RPMU of (I-6)
R1		
## -----------------------------------------

R2	        2748577 (100.0000%)	[A] Total raw reads
R2	        2698178 (98.1664%)	[B] Total reads after QC of (A)
R2		
R2	        2698178 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R2	        4927828 (91.3177%)	[B-3] Total mapped reads of (B-2)x2
R2	         468528 (8.6823%)	[B-4] Total unmapped reads of (B-2)x2
R2	        2443853 (90.5742%)	[F] Total mapped reads of (B-2)
R2	         254325 (9.4258%)	[G] Total unmapped reads of (B-2)
R2	          38743 (1.4359%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R2	        2659435 (98.5641%)	[J] Total mapped reads to host genome ( (B-2)-H)
R2	           2845 (0.1054%)	[I-1] Total mapped reads of (H) to exo. genomes
R2	      1069.776	[I-3] RPMH of (I-1)
R2	      1054.415	[I-4] PPM of (I-1)
R2	     73432.620	[I-5] RPMU of (I-1)
R2	             16 (0.0006%)	[I-6] Total chimeric reads of (I-1)
R2	         6.016	[I-7] RPMH of (I-6)
R2	         5.930	[I-8] PPM of (I-6)
R2	       412.978	[I-9] RPMU of (I-6)
R2		
## -----------------------------------------

##=============================================##
# List threshold of RPMU   > 1
# List threshold of P-value < 0.001
# RPMH	PPM	RPMU	Total	Multi_Reads(All_ExoGenus)	Uniq_Reads(This_Genus)	wTotal	Sum_ReadLength	Type	Exo	Genus	Pvalue(Uniq)
1072.3802	1063.3101	125717.5409	2869	0	2869	2869.000	286173	ALL_R1	viral	Lymphocryptovirus	0.0
<<
1065.6399	1050.3384	73148.6978	2834	0	2834	2834.000	282416	ALL_R2	viral	Lymphocryptovirus	0.0
<<
4.1116	4.0768	482.0122	11	0	11	11.000	1097	R1U	viral	Lymphocryptovirus	n/a	
<<
0.3760	0.3706	25.8111	1	0	1	1.000	100	R2U	bacteria	Mycobacterium	n/a	
<<
5.6403	5.5593	387.1667	15	0	15	15.000	1489	R2U	viral	Lymphocryptovirus	n/a