# 2020/05/14 11:41:37
# HUMAN	Target (Host) organism
# DNA	Sequencing source
# ERR244611	Replication ID
# SRP000540	Sample ID
# ERR244611_1.filt	Read1
# ERR244611_2.filt	Read2
R1	        2698841 (100.0000%)	[A] Total raw reads
R1	        2651985 (98.2638%)	[B] Total reads after QC of (A)
R1		
R1	        2651985 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R1	        4869454 (91.8077%)	[B-3] Total mapped reads of (B-2)x2
R1	         434516 (8.1923%)	[B-4] Total unmapped reads of (B-2)x2
R1	        2448098 (92.3119%)	[F] Total mapped reads of (B-2)
R1	         203887 (7.6881%)	[G] Total unmapped reads of (B-2)
R1	          22027 (0.8306%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R1	        2629958 (99.1694%)	[J] Total mapped reads to host genome ( (B-2)-H)
R1	           2980 (0.1124%)	[I-1] Total mapped reads of (H) to exo. genomes
R1	      1133.098	[I-3] RPMH of (I-1)
R1	      1123.687	[I-4] PPM of (I-1)
R1	    135288.510	[I-5] RPMU of (I-1)
R1	              7 (0.0003%)	[I-6] Total chimeric reads of (I-1)
R1	         2.662	[I-7] RPMH of (I-6)
R1	         2.639	[I-8] PPM of (I-6)
R1	       317.792	[I-9] RPMU of (I-6)
R1		
## -----------------------------------------

R2	        2698841 (100.0000%)	[A] Total raw reads
R2	        2651985 (98.2638%)	[B] Total reads after QC of (A)
R2		
R2	        2651985 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R2	        4869454 (91.8077%)	[B-3] Total mapped reads of (B-2)x2
R2	         434516 (8.1923%)	[B-4] Total unmapped reads of (B-2)x2
R2	        2421356 (91.3035%)	[F] Total mapped reads of (B-2)
R2	         230629 (8.6965%)	[G] Total unmapped reads of (B-2)
R2	          33084 (1.2475%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R2	        2618901 (98.7525%)	[J] Total mapped reads to host genome ( (B-2)-H)
R2	           2961 (0.1117%)	[I-1] Total mapped reads of (H) to exo. genomes
R2	      1130.627	[I-3] RPMH of (I-1)
R2	      1116.522	[I-4] PPM of (I-1)
R2	     89499.456	[I-5] RPMU of (I-1)
R2	             14 (0.0005%)	[I-6] Total chimeric reads of (I-1)
R2	         5.346	[I-7] RPMH of (I-6)
R2	         5.279	[I-8] PPM of (I-6)
R2	       423.165	[I-9] RPMU of (I-6)
R2		
## -----------------------------------------

##=============================================##
# List threshold of RPMU   > 1
# List threshold of P-value < 0.001
# RPMH	PPM	RPMU	Total	Multi_Reads(All_ExoGenus)	Uniq_Reads(This_Genus)	wTotal	Sum_ReadLength	Type	Exo	Genus	Pvalue(Uniq)
1131.9572	1122.5554	135152.3131	2977	0	2977	2977.000	296647	ALL_R1	viral	Lymphocryptovirus	0.0
<<
1130.2451	1116.1451	89469.2298	2960	0	2960	2960.000	295129	ALL_R2	viral	Lymphocryptovirus	0.0
<<
2.6616	2.6395	317.7918	7	0	7	7.000	700	R1U	viral	Lymphocryptovirus	n/a	
<<
5.3458	5.2791	423.1653	14	0	14	14.000	1399	R2U	viral	Lymphocryptovirus	n/a