# 2020/05/14 03:31:41
# HUMAN	Target (Host) organism
# DNA	Sequencing source
# ERR244451	Replication ID
# SRP000540	Sample ID
# ERR244451_1.filt	Read1
# ERR244451_2.filt	Read2
R1	        2714896 (100.0000%)	[A] Total raw reads
R1	        2668051 (98.2745%)	[B] Total reads after QC of (A)
R1		
R1	        2668051 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R1	        4899517 (91.8183%)	[B-3] Total mapped reads of (B-2)x2
R1	         436585 (8.1817%)	[B-4] Total unmapped reads of (B-2)x2
R1	        2462546 (92.2976%)	[F] Total mapped reads of (B-2)
R1	         205505 (7.7024%)	[G] Total unmapped reads of (B-2)
R1	          22231 (0.8332%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R1	        2645820 (99.1668%)	[J] Total mapped reads to host genome ( (B-2)-H)
R1	           2865 (0.1074%)	[I-1] Total mapped reads of (H) to exo. genomes
R1	      1082.840	[I-3] RPMH of (I-1)
R1	      1073.818	[I-4] PPM of (I-1)
R1	    128874.095	[I-5] RPMU of (I-1)
R1	             25 (0.0009%)	[I-6] Total chimeric reads of (I-1)
R1	         9.449	[I-7] RPMH of (I-6)
R1	         9.370	[I-8] PPM of (I-6)
R1	      1124.556	[I-9] RPMU of (I-6)
R1		
## -----------------------------------------

R2	        2714896 (100.0000%)	[A] Total raw reads
R2	        2668051 (98.2745%)	[B] Total reads after QC of (A)
R2		
R2	        2668051 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R2	        4899517 (91.8183%)	[B-3] Total mapped reads of (B-2)x2
R2	         436585 (8.1817%)	[B-4] Total unmapped reads of (B-2)x2
R2	        2436971 (91.3390%)	[F] Total mapped reads of (B-2)
R2	         231080 (8.6610%)	[G] Total unmapped reads of (B-2)
R2	          32269 (1.2095%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R2	        2635782 (98.7905%)	[J] Total mapped reads to host genome ( (B-2)-H)
R2	           2779 (0.1042%)	[I-1] Total mapped reads of (H) to exo. genomes
R2	      1054.336	[I-3] RPMH of (I-1)
R2	      1041.584	[I-4] PPM of (I-1)
R2	     86119.805	[I-5] RPMU of (I-1)
R2	              7 (0.0003%)	[I-6] Total chimeric reads of (I-1)
R2	         2.656	[I-7] RPMH of (I-6)
R2	         2.624	[I-8] PPM of (I-6)
R2	       216.927	[I-9] RPMU of (I-6)
R2		
## -----------------------------------------

##=============================================##
# List threshold of RPMU   > 1
# List threshold of P-value < 0.001
# RPMH	PPM	RPMU	Total	Multi_Reads(All_ExoGenus)	Uniq_Reads(This_Genus)	wTotal	Sum_ReadLength	Type	Exo	Genus	Pvalue(Uniq)
1080.9503	1071.9435	128649.1836	2860	0	2860	2860.000	285155	ALL_R1	viral	Lymphocryptovirus	0.0
<<
1053.1979	1040.4599	86026.8369	2776	0	2776	2776.000	276670	ALL_R2	viral	Lymphocryptovirus	0.0
<<
9.4489	9.3701	1124.5558	25	0	25	25.000	2493	R1U	viral	Lymphocryptovirus	n/a	
<<
2.6558	2.6236	216.9265	7	0	7	7.000	698	R2U	viral	Lymphocryptovirus	n/a