# 2020/05/18 18:59:50 # HUMAN Target (Host) organism # RNA Sequencing source # ERR188283 Replication ID # ERR188283 Sample ID # ERR188283_1 Read1 # ERR188283_2 Read2 R1 24907013 (100.0000%) [A] Total raw reads R1 24371825 (97.8513%) [B] Total reads after QC of (A) R1 R1 24371825 (100.0000%) [B-2] Total reads of (B) passed to HISAT2 R1 36011561 (73.8795%) [B-3] Total mapped reads of (B-2)x2 R1 12732089 (26.1205%) [B-4] Total unmapped reads of (B-2)x2 R1 18085639 (74.2072%) [F] Total mapped reads of (B-2) R1 6286186 (25.7928%) [G] Total unmapped reads of (B-2) R1 95671 (0.3925%) [H] Total unmapped reads of (B-2) after running BLASTn with (G) R1 24276154 (99.6075%) [J] Total mapped reads to host genome ( (B-2)-H) R1 66853 (0.2743%) [I-1] Total mapped reads of (H) to exo. genomes R1 2753.855 [I-3] RPMH of (I-1) R1 2743.044 [I-4] PPM of (I-1) R1 698780.195 [I-5] RPMU of (I-1) R1 57 (0.0002%) [I-6] Total chimeric reads of (I-1) R1 2.348 [I-7] RPMH of (I-6) R1 2.339 [I-8] PPM of (I-6) R1 595.792 [I-9] RPMU of (I-6) R1 ## ----------------------------------------- R2 24907013 (100.0000%) [A] Total raw reads R2 24371825 (97.8513%) [B] Total reads after QC of (A) R2 R2 24371825 (100.0000%) [B-2] Total reads of (B) passed to HISAT2 R2 36011561 (73.8795%) [B-3] Total mapped reads of (B-2)x2 R2 12732089 (26.1205%) [B-4] Total unmapped reads of (B-2)x2 R2 17925922 (73.5518%) [F] Total mapped reads of (B-2) R2 6445903 (26.4482%) [G] Total unmapped reads of (B-2) R2 120303 (0.4936%) [H] Total unmapped reads of (B-2) after running BLASTn with (G) R2 24251522 (99.5064%) [J] Total mapped reads to host genome ( (B-2)-H) R2 66051 (0.2710%) [I-1] Total mapped reads of (H) to exo. genomes R2 2723.582 [I-3] RPMH of (I-1) R2 2710.138 [I-4] PPM of (I-1) R2 549038.677 [I-5] RPMU of (I-1) R2 101 (0.0004%) [I-6] Total chimeric reads of (I-1) R2 4.165 [I-7] RPMH of (I-6) R2 4.144 [I-8] PPM of (I-6) R2 839.547 [I-9] RPMU of (I-6) R2 ## ----------------------------------------- ##=============================================## # List threshold of RPMU > 1 # List threshold of P-value < 0.001 # RPMH PPM RPMU Total Multi_Reads(All_ExoGenus) Uniq_Reads(This_Genus) wTotal Sum_ReadLength Type Exo Genus Pvalue(Uniq) 105.8785 105.4628 26866.2604 2817 1339 1478 2570.322 209693 ALL_R1 bacteria Nocardia 0.0 15.2545 15.1946 3870.7759 400 49 351 370.321 29029 ALL_R1 bacteria Escherichia 2.92e-289 3.9481 3.9326 1001.8083 115 27 88 95.844 8535 ALL_R1 bacteria Staphylococcus 2.19e-17 << 135.1042 134.5738 34282.1754 3375 219 3156 3279.810 249781 ALL_R1 fungi Saccharomyces 0.0 << 521.2934 519.2471 132276.2384 12655 0 12655 12655.000 938088 ALL_R1 viral Lymphocryptovirus 0.0 << 101.4252 100.9246 20446.0072 2803 1702 1101 2459.716 208594 ALL_R2 bacteria Nocardia 0.0 14.6562 14.5838 2954.4982 389 64 325 355.435 28042 ALL_R2 bacteria Escherichia 4.19e-251 4.0289 4.0090 812.1659 113 19 94 97.706 8437 ALL_R2 bacteria Staphylococcus 2.26e-21 << 133.6058 132.9463 26933.1937 3392 252 3140 3240.144 251831 ALL_R2 fungi Saccharomyces 0.0 << 516.2975 513.7490 104078.8675 12521 0 12521 12521.000 930364 ALL_R2 viral Lymphocryptovirus 0.0 << 0.0412 0.0410 10.4525 1 0 1 1.000 75 R1U bacteria Planococcus n/a 0.0412 0.0410 10.4525 1 0 1 1.000 51 R1U bacteria Lachnoclostridium n/a << 0.1578 0.1572 40.0435 5 2 3 3.831 291 R1U fungi Leptosphaeria n/a 0.0753 0.0750 19.0967 2 1 1 1.827 119 R1U fungi Colletotrichum n/a 0.0414 0.0412 10.4943 2 1 1 1.004 150 R1U fungi Tuber n/a 0.0414 0.0412 10.4943 2 1 1 1.004 148 R1U fungi Phycomyces n/a 0.0414 0.0412 10.4943 2 1 1 1.004 122 R1U fungi Melampsora n/a 0.0414 0.0412 10.4943 2 1 1 1.004 114 R1U fungi Histoplasma n/a 0.0412 0.0410 10.4525 1 0 1 1.000 75 R1U fungi Vittaforma n/a 0.0412 0.0410 10.4525 1 0 1 1.000 54 R1U fungi Vavraia n/a << 0.5355 0.5334 135.8823 13 0 13 13.000 949 R1U viral Lymphocryptovirus n/a << 0.0960 0.0955 19.3428 3 2 1 2.327 132 R2U bacteria Roseobacter n/a 0.0843 0.0839 16.9904 3 2 1 2.044 217 R2U bacteria Catellicoccus n/a 0.0831 0.0827 16.7577 4 3 1 2.016 276 R2U bacteria Mycobacterium n/a 0.0412 0.0410 8.3123 1 0 1 1.000 75 R2U bacteria Nocardia n/a 0.0412 0.0410 8.3123 1 0 1 1.000 75 R2U bacteria Flammeovirga n/a 0.0412 0.0410 8.3123 1 0 1 1.000 46 R2U bacteria Fusobacterium n/a 0.0412 0.0410 8.3123 1 0 1 1.000 37 R2U bacteria Synechococcus n/a << 0.3241 0.3225 65.3433 11 5 6 7.861 674 R2U fungi Parastagonospora n/a 0.3078 0.3063 62.0517 10 4 6 7.465 619 R2U fungi Aspergillus n/a 0.2694 0.2681 54.3045 8 2 6 6.533 434 R2U fungi Leptosphaeria n/a 0.2464 0.2452 49.6746 8 4 4 5.976 512 R2U fungi Botrytis n/a 0.1639 0.1631 33.0499 5 3 2 3.976 300 R2U fungi Schizosaccharomyces n/a 0.1296 0.1290 26.1340 6 5 1 3.144 313 R2U fungi Uncinocarpus n/a 0.1237 0.1231 24.9370 3 0 3 3.000 154 R2U fungi Melampsora n/a 0.1107 0.1101 22.3103 6 5 1 2.684 349 R2U fungi Neofusicoccum n/a 0.1081 0.1075 21.7867 5 4 1 2.621 283 R2U fungi Paracoccidioides n/a 0.0840 0.0835 16.9239 5 4 1 2.036 251 R2U fungi Thielavia n/a 0.0825 0.0821 16.6247 2 0 2 2.000 136 R2U fungi Cladophialophora n/a 0.0825 0.0821 16.6247 2 0 2 2.000 117 R2U fungi Vavraia n/a 0.0684 0.0681 13.7902 4 3 1 1.659 229 R2U fungi Pseudogymnoascus n/a 0.0684 0.0681 13.7902 4 3 1 1.659 201 R2U fungi Malassezia n/a 0.0628 0.0625 12.6597 3 2 1 1.523 163 R2U fungi Phycomyces n/a 0.0507 0.0505 10.2242 3 2 1 1.230 169 R2U fungi Chaetomium n/a 0.0417 0.0415 8.4038 3 2 1 1.011 165 R2U fungi Phialophora n/a 0.0412 0.0410 8.3123 2 1 1 1.000 86 R2U fungi Vanderwaltozyma n/a 0.0412 0.0410 8.3123 2 1 1 1.000 75 R2U fungi Laccaria n/a 0.0412 0.0410 8.3123 2 1 1 1.000 112 R2U fungi Tuber n/a 0.0412 0.0410 8.3123 1 0 1 1.000 48 R2U fungi Moniliophthora n/a 0.0412 0.0410 8.3123 1 0 1 1.000 47 R2U fungi Pochonia n/a 0.0412 0.0410 8.3123 1 0 1 1.000 42 R2U fungi Auricularia n/a 0.0412 0.0410 8.3123 1 0 1 1.000 36 R2U fungi Wallemia n/a << 0.9896 0.9847 199.4963 24 0 24 24.000 1767 R2U viral Lymphocryptovirus n/a