# 2020/05/16 18:00:58
# HUMAN	Target (Host) organism
# RNA	Sequencing source
# ERR188269	Replication ID
# ERR188269	Sample ID
# ERR188269_1	Read1
# ERR188269_2	Read2
R1	       41307683 (100.0000%)	[A] Total raw reads
R1	       40336929 (97.6499%)	[B] Total reads after QC of (A)
R1		
R1	       40336929 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R1	       75251992 (93.2793%)	[B-3] Total mapped reads of (B-2)x2
R1	        5421866 (6.7207%)	[B-4] Total unmapped reads of (B-2)x2
R1	       37694035 (93.4480%)	[F] Total mapped reads of (B-2)
R1	        2642894 (6.5520%)	[G] Total unmapped reads of (B-2)
R1	         268975 (0.6668%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R1	       40067954 (99.3332%)	[J] Total mapped reads to host genome ( (B-2)-H)
R1	         193700 (0.4802%)	[I-1] Total mapped reads of (H) to exo. genomes
R1	      4834.287	[I-3] RPMH of (I-1)
R1	      4802.051	[I-4] PPM of (I-1)
R1	    720141.277	[I-5] RPMU of (I-1)
R1	            806 (0.0020%)	[I-6] Total chimeric reads of (I-1)
R1	        20.116	[I-7] RPMH of (I-6)
R1	        19.982	[I-8] PPM of (I-6)
R1	      2996.561	[I-9] RPMU of (I-6)
R1		
## -----------------------------------------

R2	       41307683 (100.0000%)	[A] Total raw reads
R2	       40336929 (97.6499%)	[B] Total reads after QC of (A)
R2		
R2	       40336929 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R2	       75251992 (93.2793%)	[B-3] Total mapped reads of (B-2)x2
R2	        5421866 (6.7207%)	[B-4] Total unmapped reads of (B-2)x2
R2	       37557957 (93.1106%)	[F] Total mapped reads of (B-2)
R2	        2778972 (6.8894%)	[G] Total unmapped reads of (B-2)
R2	         332111 (0.8233%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R2	       40004818 (99.1767%)	[J] Total mapped reads to host genome ( (B-2)-H)
R2	         186739 (0.4629%)	[I-1] Total mapped reads of (H) to exo. genomes
R2	      4667.913	[I-3] RPMH of (I-1)
R2	      4629.480	[I-4] PPM of (I-1)
R2	    562278.877	[I-5] RPMU of (I-1)
R2	            487 (0.0012%)	[I-6] Total chimeric reads of (I-1)
R2	        12.173	[I-7] RPMH of (I-6)
R2	        12.073	[I-8] PPM of (I-6)
R2	      1466.377	[I-9] RPMU of (I-6)
R2		
## -----------------------------------------

##=============================================##
# List threshold of RPMU   > 1
# List threshold of P-value < 0.001
# RPMH	PPM	RPMU	Total	Multi_Reads(All_ExoGenus)	Uniq_Reads(This_Genus)	wTotal	Sum_ReadLength	Type	Exo	Genus	Pvalue(Uniq)
6.7847	6.7395	1010.6887	291	30	261	271.850	21966	ALL_R1	bacteria	Escherichia	1.23e-93
<<
3452.6345	3429.6116	514322.8925	138340	0	138340	138340.000	10387437	ALL_R1	viral	Lymphocryptovirus	0.0
<<
5.9504	5.9014	716.7664	266	43	223	238.046	17919	ALL_R2	bacteria	Escherichia	7.90e-67
<<
3445.0100	3416.6458	414972.7049	137817	0	137817	137817.000	10272603	ALL_R2	viral	Lymphocryptovirus	0.0
135.6109	134.4943	16335.1681	47717	47716	1	5425.089	3274595	ALL_R2	viral	Phix174microvirus	n/a
<<
0.0250	0.0248	3.7178	1	0	1	1.000	76	R1U	bacteria	Meiothermus	n/a	
0.0250	0.0248	3.7178	1	0	1	1.000	38	R1U	bacteria	Clostridium	n/a	
<<
0.0562	0.0558	8.3651	3	2	1	2.250	161	R1U	fungi	Fusarium	n/a	
0.0499	0.0496	7.4356	2	0	2	2.000	127	R1U	fungi	Schizosaccharomyces	n/a	
0.0406	0.0403	6.0415	2	1	1	1.625	114	R1U	fungi	Aspergillus	n/a	
0.0250	0.0248	3.7178	1	0	1	1.000	75	R1U	fungi	Rhodotorula	n/a	
0.0250	0.0248	3.7178	1	0	1	1.000	54	R1U	fungi	Endocarpon	n/a	
0.0250	0.0248	3.7178	1	0	1	1.000	44	R1U	fungi	Paraphaeosphaeria	n/a	
0.0250	0.0248	3.7178	1	0	1	1.000	40	R1U	fungi	Sordaria	n/a	
0.0250	0.0248	3.7178	1	0	1	1.000	38	R1U	fungi	Coniophora	n/a	
<<
9.3591	9.2967	1394.1816	375	0	375	375.000	27913	R1U	viral	Lymphocryptovirus	n/a	
<<
0.0460	0.0456	5.5433	3	2	1	1.841	116	R2U	bacteria	Paenibacillus	n/a	
0.0250	0.0248	3.0110	1	0	1	1.000	76	R2U	bacteria	Fusobacterium	n/a	
0.0250	0.0248	3.0110	1	0	1	1.000	54	R2U	bacteria	Cystobacter	n/a	
0.0250	0.0248	3.0110	1	0	1	1.000	52	R2U	bacteria	Flammeovirga	n/a	
0.0250	0.0248	3.0110	1	0	1	1.000	43	R2U	bacteria	Clostridium	n/a	
0.0250	0.0248	3.0110	1	0	1	1.000	40	R2U	bacteria	Asticcacaulis	n/a	
0.0250	0.0248	3.0110	1	0	1	1.000	37	R2U	bacteria	Cyanothece	n/a	
0.0250	0.0248	3.0110	1	0	1	1.000	37	R2U	bacteria	Bacillus	n/a	
0.0250	0.0248	3.0110	1	0	1	1.000	36	R2U	bacteria	Comamonas	n/a	
<<
0.0750	0.0744	9.0331	3	0	3	3.000	145	R2U	fungi	Exophiala	n/a	
0.0605	0.0600	7.2897	3	1	2	2.421	146	R2U	fungi	Schizosaccharomyces	n/a	
0.0355	0.0352	4.2787	2	1	1	1.421	83	R2U	fungi	Colletotrichum	n/a	
0.0355	0.0352	4.2787	2	1	1	1.421	82	R2U	fungi	Penicillium	n/a	
0.0250	0.0248	3.0110	1	0	1	1.000	62	R2U	fungi	Auricularia	n/a	
0.0250	0.0248	3.0110	1	0	1	1.000	56	R2U	fungi	Trametes	n/a	
0.0250	0.0248	3.0110	1	0	1	1.000	56	R2U	fungi	Fibroporia	n/a	
0.0250	0.0248	3.0110	1	0	1	1.000	50	R2U	fungi	Moesziomyces	n/a	
0.0250	0.0248	3.0110	1	0	1	1.000	47	R2U	fungi	Yarrowia	n/a	
0.0250	0.0248	3.0110	1	0	1	1.000	47	R2U	fungi	Rhodotorula	n/a	
0.0250	0.0248	3.0110	1	0	1	1.000	44	R2U	fungi	Trichoderma	n/a	
0.0250	0.0248	3.0110	1	0	1	1.000	44	R2U	fungi	Batrachochytrium	n/a	
0.0250	0.0248	3.0110	1	0	1	1.000	43	R2U	fungi	Punctularia	n/a	
0.0250	0.0248	3.0110	1	0	1	1.000	40	R2U	fungi	Metschnikowia	n/a	
0.0250	0.0248	3.0110	1	0	1	1.000	39	R2U	fungi	Ustilago	n/a	
0.0250	0.0248	3.0110	1	0	1	1.000	38	R2U	fungi	Encephalitozoon	n/a	
0.0250	0.0248	3.0110	1	0	1	1.000	38	R2U	fungi	Chaetomium	n/a	
0.0250	0.0248	3.0110	1	0	1	1.000	36	R2U	fungi	Kalmanozyma	n/a	
<<
10.9487	10.8585	1318.8362	438	0	438	438.000	32143	R2U	viral	Lymphocryptovirus	n/a