# 2020/05/09 13:21:38
# HUMAN	Target (Host) organism
# DNA	Sequencing source
# ERR263422	Replication ID
# SRP000540	Sample ID
# ERR263422_1.filt	Read1
# ERR263422_2.filt	Read2
R1	        4242620 (100.0000%)	[A] Total raw reads
R1	        4171732 (98.3291%)	[B] Total reads after QC of (A)
R1		
R1	        4171732 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R1	        7679180 (92.0383%)	[B-3] Total mapped reads of (B-2)x2
R1	         664284 (7.9617%)	[B-4] Total unmapped reads of (B-2)x2
R1	        3871064 (92.7927%)	[F] Total mapped reads of (B-2)
R1	         300668 (7.2073%)	[G] Total unmapped reads of (B-2)
R1	          29986 (0.7188%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R1	        4141746 (99.2812%)	[J] Total mapped reads to host genome ( (B-2)-H)
R1	           3270 (0.0784%)	[I-1] Total mapped reads of (H) to exo. genomes
R1	       789.522	[I-3] RPMH of (I-1)
R1	       783.847	[I-4] PPM of (I-1)
R1	    109050.890	[I-5] RPMU of (I-1)
R1	              7 (0.0002%)	[I-6] Total chimeric reads of (I-1)
R1	         1.690	[I-7] RPMH of (I-6)
R1	         1.678	[I-8] PPM of (I-6)
R1	       233.442	[I-9] RPMU of (I-6)
R1		
## -----------------------------------------

R2	        4242620 (100.0000%)	[A] Total raw reads
R2	        4171732 (98.3291%)	[B] Total reads after QC of (A)
R2		
R2	        4171732 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R2	        7679180 (92.0383%)	[B-3] Total mapped reads of (B-2)x2
R2	         664284 (7.9617%)	[B-4] Total unmapped reads of (B-2)x2
R2	        3808116 (91.2838%)	[F] Total mapped reads of (B-2)
R2	         363616 (8.7162%)	[G] Total unmapped reads of (B-2)
R2	          53303 (1.2777%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R2	        4118429 (98.7223%)	[J] Total mapped reads to host genome ( (B-2)-H)
R2	           3169 (0.0760%)	[I-1] Total mapped reads of (H) to exo. genomes
R2	       769.468	[I-3] RPMH of (I-1)
R2	       759.637	[I-4] PPM of (I-1)
R2	     59452.564	[I-5] RPMU of (I-1)
R2	              3 (0.0001%)	[I-6] Total chimeric reads of (I-1)
R2	         0.728	[I-7] RPMH of (I-6)
R2	         0.719	[I-8] PPM of (I-6)
R2	        56.282	[I-9] RPMU of (I-6)
R2		
## -----------------------------------------

##=============================================##
# List threshold of RPMU   > 1
# List threshold of P-value < 0.001
# RPMH	PPM	RPMU	Total	Multi_Reads(All_ExoGenus)	Uniq_Reads(This_Genus)	wTotal	Sum_ReadLength	Type	Exo	Genus	Pvalue(Uniq)
789.0392	783.3677	108984.1926	3268	0	3268	3268.000	325878	ALL_R1	viral	Lymphocryptovirus	0.0
<<
768.9825	759.1571	59415.0423	3167	0	3167	3167.000	315573	ALL_R2	viral	Lymphocryptovirus	0.0
<<
1.6901	1.6780	233.4423	7	0	7	7.000	698	R1U	viral	Lymphocryptovirus	n/a	
<<
0.7284	0.7191	56.2820	3	0	3	3.000	298	R2U	viral	Lymphocryptovirus	n/a