# 2020/05/06 23:01:36
# HUMAN	Target (Host) organism
# DNA	Sequencing source
# ERR245887	Replication ID
# SRP000540	Sample ID
# ERR245887_1.filt	Read1
# ERR245887_2.filt	Read2
R1	        4658797 (100.0000%)	[A] Total raw reads
R1	        4578927 (98.2856%)	[B] Total reads after QC of (A)
R1		
R1	        4578927 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R1	        8403235 (91.7599%)	[B-3] Total mapped reads of (B-2)x2
R1	         754619 (8.2401%)	[B-4] Total unmapped reads of (B-2)x2
R1	        4232765 (92.4401%)	[F] Total mapped reads of (B-2)
R1	         346162 (7.5599%)	[G] Total unmapped reads of (B-2)
R1	          40012 (0.8738%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R1	        4538915 (99.1262%)	[J] Total mapped reads to host genome ( (B-2)-H)
R1	           4542 (0.0992%)	[I-1] Total mapped reads of (H) to exo. genomes
R1	      1000.680	[I-3] RPMH of (I-1)
R1	       991.935	[I-4] PPM of (I-1)
R1	    113515.945	[I-5] RPMU of (I-1)
R1	              2 (0.0000%)	[I-6] Total chimeric reads of (I-1)
R1	         0.441	[I-7] RPMH of (I-6)
R1	         0.437	[I-8] PPM of (I-6)
R1	        49.985	[I-9] RPMU of (I-6)
R1		
## -----------------------------------------

R2	        4658797 (100.0000%)	[A] Total raw reads
R2	        4578927 (98.2856%)	[B] Total reads after QC of (A)
R2		
R2	        4578927 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R2	        8403235 (91.7599%)	[B-3] Total mapped reads of (B-2)x2
R2	         754619 (8.2401%)	[B-4] Total unmapped reads of (B-2)x2
R2	        4170470 (91.0796%)	[F] Total mapped reads of (B-2)
R2	         408457 (8.9204%)	[G] Total unmapped reads of (B-2)
R2	          63290 (1.3822%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R2	        4515637 (98.6178%)	[J] Total mapped reads to host genome ( (B-2)-H)
R2	           4450 (0.0972%)	[I-1] Total mapped reads of (H) to exo. genomes
R2	       985.465	[I-3] RPMH of (I-1)
R2	       971.843	[I-4] PPM of (I-1)
R2	     70311.266	[I-5] RPMU of (I-1)
R2	              2 (0.0000%)	[I-6] Total chimeric reads of (I-1)
R2	         0.443	[I-7] RPMH of (I-6)
R2	         0.437	[I-8] PPM of (I-6)
R2	        31.601	[I-9] RPMU of (I-6)
R2		
## -----------------------------------------

##=============================================##
# List threshold of RPMU   > 1
# List threshold of P-value < 0.001
# RPMH	PPM	RPMU	Total	Multi_Reads(All_ExoGenus)	Uniq_Reads(This_Genus)	wTotal	Sum_ReadLength	Type	Exo	Genus	Pvalue(Uniq)
999.1375	990.4067	113340.9977	4535	0	4535	4535.000	452254	ALL_R1	viral	Lymphocryptovirus	0.0
<<
984.3572	970.7514	70232.2642	4445	0	4445	4445.000	442924	ALL_R2	viral	Lymphocryptovirus	0.0
<<
0.2203	0.2184	24.9925	1	0	1	1.000	100	R1U	viral	Phix174microvirus	n/a	
0.2203	0.2184	24.9925	1	0	1	1.000	100	R1U	viral	Lymphocryptovirus	n/a	
<<
0.4429	0.4368	31.6006	2	0	2	2.000	199	R2U	viral	Lymphocryptovirus	n/a