# 2020/05/08 21:36:38
# HUMAN	Target (Host) organism
# DNA	Sequencing source
# ERR244647	Replication ID
# SRP000540	Sample ID
# ERR244647_1.filt	Read1
# ERR244647_2.filt	Read2
R1	        1751255 (100.0000%)	[A] Total raw reads
R1	        1714240 (97.8864%)	[B] Total reads after QC of (A)
R1		
R1	        1714240 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R1	        3153955 (91.9928%)	[B-3] Total mapped reads of (B-2)x2
R1	         274525 (8.0072%)	[B-4] Total unmapped reads of (B-2)x2
R1	        1585883 (92.5123%)	[F] Total mapped reads of (B-2)
R1	         128357 (7.4877%)	[G] Total unmapped reads of (B-2)
R1	          13308 (0.7763%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R1	        1700932 (99.2237%)	[J] Total mapped reads to host genome ( (B-2)-H)
R1	            792 (0.0462%)	[I-1] Total mapped reads of (H) to exo. genomes
R1	       465.627	[I-3] RPMH of (I-1)
R1	       462.012	[I-4] PPM of (I-1)
R1	     59513.075	[I-5] RPMU of (I-1)
R1	              1 (0.0001%)	[I-6] Total chimeric reads of (I-1)
R1	         0.588	[I-7] RPMH of (I-6)
R1	         0.583	[I-8] PPM of (I-6)
R1	        75.143	[I-9] RPMU of (I-6)
R1		
## -----------------------------------------

R2	        1751255 (100.0000%)	[A] Total raw reads
R2	        1714240 (97.8864%)	[B] Total reads after QC of (A)
R2		
R2	        1714240 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R2	        3153955 (91.9928%)	[B-3] Total mapped reads of (B-2)x2
R2	         274525 (8.0072%)	[B-4] Total unmapped reads of (B-2)x2
R2	        1568072 (91.4733%)	[F] Total mapped reads of (B-2)
R2	         146168 (8.5267%)	[G] Total unmapped reads of (B-2)
R2	          20034 (1.1687%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R2	        1694206 (98.8313%)	[J] Total mapped reads to host genome ( (B-2)-H)
R2	            790 (0.0461%)	[I-1] Total mapped reads of (H) to exo. genomes
R2	       466.295	[I-3] RPMH of (I-1)
R2	       460.846	[I-4] PPM of (I-1)
R2	     39432.964	[I-5] RPMU of (I-1)
R2	              1 (0.0001%)	[I-6] Total chimeric reads of (I-1)
R2	         0.590	[I-7] RPMH of (I-6)
R2	         0.583	[I-8] PPM of (I-6)
R2	        49.915	[I-9] RPMU of (I-6)
R2		
## -----------------------------------------

##=============================================##
# List threshold of RPMU   > 1
# List threshold of P-value < 0.001
# RPMH	PPM	RPMU	Total	Multi_Reads(All_ExoGenus)	Uniq_Reads(This_Genus)	wTotal	Sum_ReadLength	Type	Exo	Genus	Pvalue(Uniq)
464.4513	460.8456	59362.7893	790	0	790	790.000	78838	ALL_R1	viral	Lymphocryptovirus	0.0
<<
465.1146	459.6789	39333.1337	788	0	788	788.000	78690	ALL_R2	viral	Lymphocryptovirus	0.0
<<
0.5879	0.5833	75.1428	1	0	1	1.000	99	R1U	viral	Lymphocryptovirus	n/a	
<<
0.5902	0.5833	49.9151	1	0	1	1.000	100	R2U	viral	Lymphocryptovirus	n/a