# 2020/05/08 06:15:37
# HUMAN	Target (Host) organism
# DNA	Sequencing source
# ERR241903	Replication ID
# SRP000540	Sample ID
# ERR241903_1.filt	Read1
# ERR241903_2.filt	Read2
R1	        1866318 (100.0000%)	[A] Total raw reads
R1	        1824796 (97.7752%)	[B] Total reads after QC of (A)
R1		
R1	        1824796 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R1	        3362777 (92.1412%)	[B-3] Total mapped reads of (B-2)x2
R1	         286815 (7.8588%)	[B-4] Total unmapped reads of (B-2)x2
R1	        1690617 (92.6469%)	[F] Total mapped reads of (B-2)
R1	         134179 (7.3531%)	[G] Total unmapped reads of (B-2)
R1	          13647 (0.7479%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R1	        1811149 (99.2521%)	[J] Total mapped reads to host genome ( (B-2)-H)
R1	            817 (0.0448%)	[I-1] Total mapped reads of (H) to exo. genomes
R1	       451.095	[I-3] RPMH of (I-1)
R1	       447.721	[I-4] PPM of (I-1)
R1	     59866.637	[I-5] RPMU of (I-1)
R1	              3 (0.0002%)	[I-6] Total chimeric reads of (I-1)
R1	         1.656	[I-7] RPMH of (I-6)
R1	         1.644	[I-8] PPM of (I-6)
R1	       219.829	[I-9] RPMU of (I-6)
R1		
## -----------------------------------------

R2	        1866318 (100.0000%)	[A] Total raw reads
R2	        1824796 (97.7752%)	[B] Total reads after QC of (A)
R2		
R2	        1824796 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R2	        3362777 (92.1412%)	[B-3] Total mapped reads of (B-2)x2
R2	         286815 (7.8588%)	[B-4] Total unmapped reads of (B-2)x2
R2	        1672160 (91.6354%)	[F] Total mapped reads of (B-2)
R2	         152636 (8.3646%)	[G] Total unmapped reads of (B-2)
R2	          20825 (1.1412%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R2	        1803971 (98.8588%)	[J] Total mapped reads to host genome ( (B-2)-H)
R2	            794 (0.0435%)	[I-1] Total mapped reads of (H) to exo. genomes
R2	       440.140	[I-3] RPMH of (I-1)
R2	       435.117	[I-4] PPM of (I-1)
R2	     38127.251	[I-5] RPMU of (I-1)
R2	              1 (0.0001%)	[I-6] Total chimeric reads of (I-1)
R2	         0.554	[I-7] RPMH of (I-6)
R2	         0.548	[I-8] PPM of (I-6)
R2	        48.019	[I-9] RPMU of (I-6)
R2		
## -----------------------------------------

##=============================================##
# List threshold of RPMU   > 1
# List threshold of P-value < 0.001
# RPMH	PPM	RPMU	Total	Multi_Reads(All_ExoGenus)	Uniq_Reads(This_Genus)	wTotal	Sum_ReadLength	Type	Exo	Genus	Pvalue(Uniq)
450.5427	447.1733	59793.3612	816	0	816	816.000	81413	ALL_R1	viral	Lymphocryptovirus	0.0
<<
439.5858	434.5691	38079.2317	793	0	793	793.000	79054	ALL_R2	viral	Lymphocryptovirus	0.0
<<
1.6564	1.6440	219.8285	3	0	3	3.000	298	R1U	viral	Lymphocryptovirus	n/a	
<<
0.5543	0.5480	48.0192	1	0	1	1.000	100	R2U	viral	Lymphocryptovirus	n/a