# 2020/05/10 19:38:06
# HUMAN	Target (Host) organism
# DNA	Sequencing source
# ERR241705	Replication ID
# SRP000540	Sample ID
# ERR241705_1.filt	Read1
# ERR241705_2.filt	Read2
R1	        4451490 (100.0000%)	[A] Total raw reads
R1	        4377519 (98.3383%)	[B] Total reads after QC of (A)
R1		
R1	        4377519 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R1	        8027913 (91.6948%)	[B-3] Total mapped reads of (B-2)x2
R1	         727125 (8.3052%)	[B-4] Total unmapped reads of (B-2)x2
R1	        4034784 (92.1706%)	[F] Total mapped reads of (B-2)
R1	         342735 (7.8294%)	[G] Total unmapped reads of (B-2)
R1	          69555 (1.5889%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R1	        4307964 (98.4111%)	[J] Total mapped reads to host genome ( (B-2)-H)
R1	          32911 (0.7518%)	[I-1] Total mapped reads of (H) to exo. genomes
R1	      7639.572	[I-3] RPMH of (I-1)
R1	      7518.186	[I-4] PPM of (I-1)
R1	    473165.121	[I-5] RPMU of (I-1)
R1	             30 (0.0007%)	[I-6] Total chimeric reads of (I-1)
R1	         6.964	[I-7] RPMH of (I-6)
R1	         6.853	[I-8] PPM of (I-6)
R1	       431.313	[I-9] RPMU of (I-6)
R1		
## -----------------------------------------

R2	        4451490 (100.0000%)	[A] Total raw reads
R2	        4377519 (98.3383%)	[B] Total reads after QC of (A)
R2		
R2	        4377519 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R2	        8027913 (91.6948%)	[B-3] Total mapped reads of (B-2)x2
R2	         727125 (8.3052%)	[B-4] Total unmapped reads of (B-2)x2
R2	        3993129 (91.2190%)	[F] Total mapped reads of (B-2)
R2	         384390 (8.7810%)	[G] Total unmapped reads of (B-2)
R2	          86055 (1.9658%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R2	        4291464 (98.0342%)	[J] Total mapped reads to host genome ( (B-2)-H)
R2	          32579 (0.7442%)	[I-1] Total mapped reads of (H) to exo. genomes
R2	      7591.582	[I-3] RPMH of (I-1)
R2	      7442.344	[I-4] PPM of (I-1)
R2	    378583.464	[I-5] RPMU of (I-1)
R2	             28 (0.0006%)	[I-6] Total chimeric reads of (I-1)
R2	         6.525	[I-7] RPMH of (I-6)
R2	         6.396	[I-8] PPM of (I-6)
R2	       325.373	[I-9] RPMU of (I-6)
R2		
## -----------------------------------------

##=============================================##
# List threshold of RPMU   > 1
# List threshold of P-value < 0.001
# RPMH	PPM	RPMU	Total	Multi_Reads(All_ExoGenus)	Uniq_Reads(This_Genus)	wTotal	Sum_ReadLength	Type	Exo	Genus	Pvalue(Uniq)
7638.4111	7517.0433	473093.2356	32906	0	32906	32906.000	3286502	ALL_R1	viral	Lymphocryptovirus	0.0
<<
7590.1837	7440.9728	378513.7412	32573	0	32573	32573.000	3252568	ALL_R2	viral	Lymphocryptovirus	0.0
<<
6.9638	6.8532	431.3133	30	0	30	30.000	2997	R1U	viral	Lymphocryptovirus	n/a	
<<
0.2330	0.2284	11.6205	1	0	1	1.000	98	R2U	fungi	Mitosporidium	n/a	
<<
6.2916	6.1679	313.7528	27	0	27	27.000	2698	R2U	viral	Lymphocryptovirus	n/a