# 2020/05/11 09:18:36
# HUMAN	Target (Host) organism
# DNA	Sequencing source
# ERR241668	Replication ID
# SRP000540	Sample ID
# ERR241668_1.filt	Read1
# ERR241668_2.filt	Read2
R1	        4232458 (100.0000%)	[A] Total raw reads
R1	        4160418 (98.2979%)	[B] Total reads after QC of (A)
R1		
R1	        4160418 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R1	        7694587 (92.4737%)	[B-3] Total mapped reads of (B-2)x2
R1	         626249 (7.5263%)	[B-4] Total unmapped reads of (B-2)x2
R1	        3868537 (92.9843%)	[F] Total mapped reads of (B-2)
R1	         291881 (7.0157%)	[G] Total unmapped reads of (B-2)
R1	          30023 (0.7216%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R1	        4130395 (99.2784%)	[J] Total mapped reads to host genome ( (B-2)-H)
R1	           4475 (0.1076%)	[I-1] Total mapped reads of (H) to exo. genomes
R1	      1083.431	[I-3] RPMH of (I-1)
R1	      1075.613	[I-4] PPM of (I-1)
R1	    149052.393	[I-5] RPMU of (I-1)
R1	              9 (0.0002%)	[I-6] Total chimeric reads of (I-1)
R1	         2.179	[I-7] RPMH of (I-6)
R1	         2.163	[I-8] PPM of (I-6)
R1	       299.770	[I-9] RPMU of (I-6)
R1		
## -----------------------------------------

R2	        4232458 (100.0000%)	[A] Total raw reads
R2	        4160418 (98.2979%)	[B] Total reads after QC of (A)
R2		
R2	        4160418 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R2	        7694587 (92.4737%)	[B-3] Total mapped reads of (B-2)x2
R2	         626249 (7.5263%)	[B-4] Total unmapped reads of (B-2)x2
R2	        3826050 (91.9631%)	[F] Total mapped reads of (B-2)
R2	         334368 (8.0369%)	[G] Total unmapped reads of (B-2)
R2	          47358 (1.1383%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R2	        4113060 (98.8617%)	[J] Total mapped reads to host genome ( (B-2)-H)
R2	           4433 (0.1066%)	[I-1] Total mapped reads of (H) to exo. genomes
R2	      1077.786	[I-3] RPMH of (I-1)
R2	      1065.518	[I-4] PPM of (I-1)
R2	     93606.149	[I-5] RPMU of (I-1)
R2	              8 (0.0002%)	[I-6] Total chimeric reads of (I-1)
R2	         1.945	[I-7] RPMH of (I-6)
R2	         1.923	[I-8] PPM of (I-6)
R2	       168.926	[I-9] RPMU of (I-6)
R2		
## -----------------------------------------

##=============================================##
# List threshold of RPMU   > 1
# List threshold of P-value < 0.001
# RPMH	PPM	RPMU	Total	Multi_Reads(All_ExoGenus)	Uniq_Reads(This_Genus)	wTotal	Sum_ReadLength	Type	Exo	Genus	Pvalue(Uniq)
1081.0104	1073.2095	148719.3152	4465	0	4465	4465.000	445476	ALL_R1	viral	Lymphocryptovirus	0.0
<<
1076.0845	1063.8354	93458.3386	4426	0	4426	4426.000	441577	ALL_R2	viral	Lymphocryptovirus	0.0
<<
1.9369	1.9229	266.4624	8	0	8	8.000	799	R1U	viral	Lymphocryptovirus	n/a	
0.2421	0.2404	33.3078	1	0	1	1.000	100	R1U	viral	Phix174microvirus	n/a	
<<
1.9450	1.9229	168.9261	8	0	8	8.000	798	R2U	viral	Lymphocryptovirus	n/a