# 2020/05/06 17:29:56
# HUMAN	Target (Host) organism
# DNA	Sequencing source
# ERR241620	Replication ID
# SRP000540	Sample ID
# ERR241620_1.filt	Read1
# ERR241620_2.filt	Read2
R1	        4855503 (100.0000%)	[A] Total raw reads
R1	        4770951 (98.2586%)	[B] Total reads after QC of (A)
R1		
R1	        4770951 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R1	        8803683 (92.2634%)	[B-3] Total mapped reads of (B-2)x2
R1	         738219 (7.7366%)	[B-4] Total unmapped reads of (B-2)x2
R1	        4423622 (92.7199%)	[F] Total mapped reads of (B-2)
R1	         347329 (7.2801%)	[G] Total unmapped reads of (B-2)
R1	          41856 (0.8773%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R1	        4729095 (99.1227%)	[J] Total mapped reads to host genome ( (B-2)-H)
R1	           4865 (0.1020%)	[I-1] Total mapped reads of (H) to exo. genomes
R1	      1028.738	[I-3] RPMH of (I-1)
R1	      1019.713	[I-4] PPM of (I-1)
R1	    116231.843	[I-5] RPMU of (I-1)
R1	             12 (0.0003%)	[I-6] Total chimeric reads of (I-1)
R1	         2.537	[I-7] RPMH of (I-6)
R1	         2.515	[I-8] PPM of (I-6)
R1	       286.697	[I-9] RPMU of (I-6)
R1		
## -----------------------------------------

R2	        4855503 (100.0000%)	[A] Total raw reads
R2	        4770951 (98.2586%)	[B] Total reads after QC of (A)
R2		
R2	        4770951 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R2	        8803683 (92.2634%)	[B-3] Total mapped reads of (B-2)x2
R2	         738219 (7.7366%)	[B-4] Total unmapped reads of (B-2)x2
R2	        4380061 (91.8069%)	[F] Total mapped reads of (B-2)
R2	         390890 (8.1931%)	[G] Total unmapped reads of (B-2)
R2	          59959 (1.2568%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R2	        4710992 (98.7432%)	[J] Total mapped reads to host genome ( (B-2)-H)
R2	           4784 (0.1003%)	[I-1] Total mapped reads of (H) to exo. genomes
R2	      1015.497	[I-3] RPMH of (I-1)
R2	      1002.735	[I-4] PPM of (I-1)
R2	     79787.855	[I-5] RPMU of (I-1)
R2	              5 (0.0001%)	[I-6] Total chimeric reads of (I-1)
R2	         1.061	[I-7] RPMH of (I-6)
R2	         1.048	[I-8] PPM of (I-6)
R2	        83.390	[I-9] RPMU of (I-6)
R2		
## -----------------------------------------

##=============================================##
# List threshold of RPMU   > 1
# List threshold of P-value < 0.001
# RPMH	PPM	RPMU	Total	Multi_Reads(All_ExoGenus)	Uniq_Reads(This_Genus)	wTotal	Sum_ReadLength	Type	Exo	Genus	Pvalue(Uniq)
1027.4693	1018.4552	116088.4939	4859	0	4859	4859.000	485248	ALL_R1	viral	Lymphocryptovirus	0.0
<<
1013.5869	1000.8487	79637.7525	4775	0	4775	4775.000	476899	ALL_R2	viral	Lymphocryptovirus	0.0
<<
2.5375	2.5152	286.6972	12	0	12	12.000	1198	R1U	viral	Lymphocryptovirus	n/a	
<<
0.8491	0.8384	66.7123	4	0	4	4.000	399	R2U	viral	Lymphocryptovirus	n/a