# 2020/05/05 05:43:37
# HUMAN	Target (Host) organism
# DNA	Sequencing source
# ERR241618	Replication ID
# SRP000540	Sample ID
# ERR241618_1.filt	Read1
# ERR241618_2.filt	Read2
R1	        4421317 (100.0000%)	[A] Total raw reads
R1	        4348308 (98.3487%)	[B] Total reads after QC of (A)
R1		
R1	        4348308 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R1	        8000348 (91.9938%)	[B-3] Total mapped reads of (B-2)x2
R1	         696268 (8.0062%)	[B-4] Total unmapped reads of (B-2)x2
R1	        4019677 (92.4423%)	[F] Total mapped reads of (B-2)
R1	         328631 (7.5577%)	[G] Total unmapped reads of (B-2)
R1	          73950 (1.7007%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R1	        4274358 (98.2993%)	[J] Total mapped reads to host genome ( (B-2)-H)
R1	          41740 (0.9599%)	[I-1] Total mapped reads of (H) to exo. genomes
R1	      9765.209	[I-3] RPMH of (I-1)
R1	      9599.136	[I-4] PPM of (I-1)
R1	    564435.429	[I-5] RPMU of (I-1)
R1	             34 (0.0008%)	[I-6] Total chimeric reads of (I-1)
R1	         7.954	[I-7] RPMH of (I-6)
R1	         7.819	[I-8] PPM of (I-6)
R1	       459.770	[I-9] RPMU of (I-6)
R1		
## -----------------------------------------

R2	        4421317 (100.0000%)	[A] Total raw reads
R2	        4348308 (98.3487%)	[B] Total reads after QC of (A)
R2		
R2	        4348308 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R2	        8000348 (91.9938%)	[B-3] Total mapped reads of (B-2)x2
R2	         696268 (8.0062%)	[B-4] Total unmapped reads of (B-2)x2
R2	        3980671 (91.5453%)	[F] Total mapped reads of (B-2)
R2	         367637 (8.4547%)	[G] Total unmapped reads of (B-2)
R2	          90209 (2.0746%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R2	        4258099 (97.9254%)	[J] Total mapped reads to host genome ( (B-2)-H)
R2	          41241 (0.9484%)	[I-1] Total mapped reads of (H) to exo. genomes
R2	      9685.308	[I-3] RPMH of (I-1)
R2	      9484.379	[I-4] PPM of (I-1)
R2	    457171.679	[I-5] RPMU of (I-1)
R2	             18 (0.0004%)	[I-6] Total chimeric reads of (I-1)
R2	         4.227	[I-7] RPMH of (I-6)
R2	         4.139	[I-8] PPM of (I-6)
R2	       199.537	[I-9] RPMU of (I-6)
R2		
## -----------------------------------------

##=============================================##
# List threshold of RPMU   > 1
# List threshold of P-value < 0.001
# RPMH	PPM	RPMU	Total	Multi_Reads(All_ExoGenus)	Uniq_Reads(This_Genus)	wTotal	Sum_ReadLength	Type	Exo	Genus	Pvalue(Uniq)
9762.8697	9596.8363	564300.2028	41730	0	41730	41730.000	4167659	ALL_R1	viral	Lymphocryptovirus	0.0
<<
9683.4292	9482.5390	457082.9962	41233	0	41233	41233.000	4117246	ALL_R2	viral	Lymphocryptovirus	0.0
<<
7.7205	7.5892	446.2475	33	0	33	33.000	3297	R1U	viral	Lymphocryptovirus	n/a	
0.2340	0.2300	13.5227	1	0	1	1.000	100	R1U	viral	Phix174microvirus	n/a	
<<
4.2272	4.1395	199.5366	18	0	18	18.000	1797	R2U	viral	Lymphocryptovirus	n/a