# 2020/05/11 22:49:35
# HUMAN	Target (Host) organism
# DNA	Sequencing source
# ERR241608	Replication ID
# SRP000540	Sample ID
# ERR241608_1.filt	Read1
# ERR241608_2.filt	Read2
R1	        4100793 (100.0000%)	[A] Total raw reads
R1	        4029323 (98.2572%)	[B] Total reads after QC of (A)
R1		
R1	        4029323 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R1	        7440597 (92.3306%)	[B-3] Total mapped reads of (B-2)x2
R1	         618049 (7.6694%)	[B-4] Total unmapped reads of (B-2)x2
R1	        3738379 (92.7793%)	[F] Total mapped reads of (B-2)
R1	         290944 (7.2207%)	[G] Total unmapped reads of (B-2)
R1	          27373 (0.6793%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R1	        4001950 (99.3207%)	[J] Total mapped reads to host genome ( (B-2)-H)
R1	           2279 (0.0566%)	[I-1] Total mapped reads of (H) to exo. genomes
R1	       569.472	[I-3] RPMH of (I-1)
R1	       565.604	[I-4] PPM of (I-1)
R1	     83257.224	[I-5] RPMU of (I-1)
R1	              2 (0.0000%)	[I-6] Total chimeric reads of (I-1)
R1	         0.500	[I-7] RPMH of (I-6)
R1	         0.496	[I-8] PPM of (I-6)
R1	        73.065	[I-9] RPMU of (I-6)
R1		
## -----------------------------------------

R2	        4100793 (100.0000%)	[A] Total raw reads
R2	        4029323 (98.2572%)	[B] Total reads after QC of (A)
R2		
R2	        4029323 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R2	        7440597 (92.3306%)	[B-3] Total mapped reads of (B-2)x2
R2	         618049 (7.6694%)	[B-4] Total unmapped reads of (B-2)x2
R2	        3702218 (91.8819%)	[F] Total mapped reads of (B-2)
R2	         327105 (8.1181%)	[G] Total unmapped reads of (B-2)
R2	          41959 (1.0413%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R2	        3987364 (98.9587%)	[J] Total mapped reads to host genome ( (B-2)-H)
R2	           2274 (0.0564%)	[I-1] Total mapped reads of (H) to exo. genomes
R2	       570.302	[I-3] RPMH of (I-1)
R2	       564.363	[I-4] PPM of (I-1)
R2	     54195.762	[I-5] RPMU of (I-1)
R2	              2 (0.0000%)	[I-6] Total chimeric reads of (I-1)
R2	         0.502	[I-7] RPMH of (I-6)
R2	         0.496	[I-8] PPM of (I-6)
R2	        47.666	[I-9] RPMU of (I-6)
R2		
## -----------------------------------------

##=============================================##
# List threshold of RPMU   > 1
# List threshold of P-value < 0.001
# RPMH	PPM	RPMU	Total	Multi_Reads(All_ExoGenus)	Uniq_Reads(This_Genus)	wTotal	Sum_ReadLength	Type	Exo	Genus	Pvalue(Uniq)
568.9726	565.1073	83184.1596	2277	0	2277	2277.000	227361	ALL_R1	viral	Lymphocryptovirus	0.0
<<
568.5460	562.6255	54028.9330	2267	0	2267	2267.000	226423	ALL_R2	viral	Lymphocryptovirus	0.0
<<
0.4998	0.4964	73.0647	2	0	2	2.000	200	R1U	viral	Lymphocryptovirus	n/a	
<<
0.2508	0.2482	23.8328	1	0	1	1.000	96	R2U	bacteria	Alcanivorax	n/a	
<<
0.2508	0.2482	23.8328	1	0	1	1.000	100	R2U	viral	Lymphocryptovirus	n/a