# 2020/05/09 06:51:36
# HUMAN	Target (Host) organism
# DNA	Sequencing source
# ERR241527	Replication ID
# SRP000540	Sample ID
# ERR241527_1.filt	Read1
# ERR241527_2.filt	Read2
R1	        4498106 (100.0000%)	[A] Total raw reads
R1	        4422631 (98.3221%)	[B] Total reads after QC of (A)
R1		
R1	        4422631 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R1	        8179583 (92.4742%)	[B-3] Total mapped reads of (B-2)x2
R1	         665679 (7.5258%)	[B-4] Total unmapped reads of (B-2)x2
R1	        4111778 (92.9713%)	[F] Total mapped reads of (B-2)
R1	         310853 (7.0287%)	[G] Total unmapped reads of (B-2)
R1	          31408 (0.7102%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R1	        4391223 (99.2898%)	[J] Total mapped reads to host genome ( (B-2)-H)
R1	           3529 (0.0798%)	[I-1] Total mapped reads of (H) to exo. genomes
R1	       803.649	[I-3] RPMH of (I-1)
R1	       797.941	[I-4] PPM of (I-1)
R1	    112359.908	[I-5] RPMU of (I-1)
R1	              5 (0.0001%)	[I-6] Total chimeric reads of (I-1)
R1	         1.139	[I-7] RPMH of (I-6)
R1	         1.131	[I-8] PPM of (I-6)
R1	       159.195	[I-9] RPMU of (I-6)
R1		
## -----------------------------------------

R2	        4498106 (100.0000%)	[A] Total raw reads
R2	        4422631 (98.3221%)	[B] Total reads after QC of (A)
R2		
R2	        4422631 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R2	        8179583 (92.4742%)	[B-3] Total mapped reads of (B-2)x2
R2	         665679 (7.5258%)	[B-4] Total unmapped reads of (B-2)x2
R2	        4067805 (91.9770%)	[F] Total mapped reads of (B-2)
R2	         354826 (8.0230%)	[G] Total unmapped reads of (B-2)
R2	          49649 (1.1226%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R2	        4372982 (98.8774%)	[J] Total mapped reads to host genome ( (B-2)-H)
R2	           3458 (0.0782%)	[I-1] Total mapped reads of (H) to exo. genomes
R2	       790.765	[I-3] RPMH of (I-1)
R2	       781.888	[I-4] PPM of (I-1)
R2	     69648.935	[I-5] RPMU of (I-1)
R2	              4 (0.0001%)	[I-6] Total chimeric reads of (I-1)
R2	         0.915	[I-7] RPMH of (I-6)
R2	         0.904	[I-8] PPM of (I-6)
R2	        80.566	[I-9] RPMU of (I-6)
R2		
## -----------------------------------------

##=============================================##
# List threshold of RPMU   > 1
# List threshold of P-value < 0.001
# RPMH	PPM	RPMU	Total	Multi_Reads(All_ExoGenus)	Uniq_Reads(This_Genus)	wTotal	Sum_ReadLength	Type	Exo	Genus	Pvalue(Uniq)
801.5990	795.9063	112073.3571	3520	0	3520	3520.000	351361	ALL_R1	viral	Lymphocryptovirus	0.0
<<
788.7067	779.8525	69467.6630	3449	0	3449	3449.000	344449	ALL_R2	viral	Lymphocryptovirus	0.0
<<
1.1386	1.1305	159.1951	5	0	5	5.000	500	R1U	viral	Lymphocryptovirus	n/a	
<<
0.9147	0.9044	80.5656	4	0	4	4.000	400	R2U	viral	Lymphocryptovirus	n/a