# 2020/05/06 13:57:08
# HUMAN	Target (Host) organism
# DNA	Sequencing source
# ERR241124	Replication ID
# SRP000540	Sample ID
# ERR241124_1.filt	Read1
# ERR241124_2.filt	Read2
R1	        4780264 (100.0000%)	[A] Total raw reads
R1	        4697405 (98.2666%)	[B] Total reads after QC of (A)
R1		
R1	        4697405 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R1	        8650487 (92.0773%)	[B-3] Total mapped reads of (B-2)x2
R1	         744323 (7.9227%)	[B-4] Total unmapped reads of (B-2)x2
R1	        4349105 (92.5853%)	[F] Total mapped reads of (B-2)
R1	         348300 (7.4147%)	[G] Total unmapped reads of (B-2)
R1	          40767 (0.8679%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R1	        4656638 (99.1321%)	[J] Total mapped reads to host genome ( (B-2)-H)
R1	           4642 (0.0988%)	[I-1] Total mapped reads of (H) to exo. genomes
R1	       996.856	[I-3] RPMH of (I-1)
R1	       988.205	[I-4] PPM of (I-1)
R1	    113866.608	[I-5] RPMU of (I-1)
R1	              6 (0.0001%)	[I-6] Total chimeric reads of (I-1)
R1	         1.288	[I-7] RPMH of (I-6)
R1	         1.277	[I-8] PPM of (I-6)
R1	       147.178	[I-9] RPMU of (I-6)
R1		
## -----------------------------------------

R2	        4780264 (100.0000%)	[A] Total raw reads
R2	        4697405 (98.2666%)	[B] Total reads after QC of (A)
R2		
R2	        4697405 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R2	        8650487 (92.0773%)	[B-3] Total mapped reads of (B-2)x2
R2	         744323 (7.9227%)	[B-4] Total unmapped reads of (B-2)x2
R2	        4301382 (91.5693%)	[F] Total mapped reads of (B-2)
R2	         396023 (8.4307%)	[G] Total unmapped reads of (B-2)
R2	          60845 (1.2953%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R2	        4636560 (98.7047%)	[J] Total mapped reads to host genome ( (B-2)-H)
R2	           4600 (0.0979%)	[I-1] Total mapped reads of (H) to exo. genomes
R2	       992.115	[I-3] RPMH of (I-1)
R2	       979.264	[I-4] PPM of (I-1)
R2	     75601.939	[I-5] RPMU of (I-1)
R2	              2 (0.0000%)	[I-6] Total chimeric reads of (I-1)
R2	         0.431	[I-7] RPMH of (I-6)
R2	         0.426	[I-8] PPM of (I-6)
R2	        32.870	[I-9] RPMU of (I-6)
R2		
## -----------------------------------------

##=============================================##
# List threshold of RPMU   > 1
# List threshold of P-value < 0.001
# RPMH	PPM	RPMU	Total	Multi_Reads(All_ExoGenus)	Uniq_Reads(This_Genus)	wTotal	Sum_ReadLength	Type	Exo	Genus	Pvalue(Uniq)
996.4270	987.7794	113817.5485	4640	0	4640	4640.000	462665	ALL_R1	viral	Lymphocryptovirus	0.0
<<
991.0365	978.1997	75519.7633	4595	0	4595	4595.000	458516	ALL_R2	viral	Lymphocryptovirus	0.0
<<
1.2885	1.2773	147.1779	6	0	6	6.000	598	R1U	viral	Lymphocryptovirus	n/a	
<<
0.4314	0.4258	32.8704	2	0	2	2.000	200	R2U	viral	Lymphocryptovirus	n/a