# 2020/05/10 15:34:37
# HUMAN	Target (Host) organism
# DNA	Sequencing source
# ERR241121	Replication ID
# SRP000540	Sample ID
# ERR241121_1.filt	Read1
# ERR241121_2.filt	Read2
R1	        4287682 (100.0000%)	[A] Total raw reads
R1	        4217493 (98.3630%)	[B] Total reads after QC of (A)
R1		
R1	        4217493 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R1	        7722400 (91.5520%)	[B-3] Total mapped reads of (B-2)x2
R1	         712586 (8.4480%)	[B-4] Total unmapped reads of (B-2)x2
R1	        3881458 (92.0324%)	[F] Total mapped reads of (B-2)
R1	         336035 (7.9676%)	[G] Total unmapped reads of (B-2)
R1	          66864 (1.5854%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R1	        4150629 (98.4146%)	[J] Total mapped reads to host genome ( (B-2)-H)
R1	          30794 (0.7301%)	[I-1] Total mapped reads of (H) to exo. genomes
R1	      7419.116	[I-3] RPMH of (I-1)
R1	      7301.494	[I-4] PPM of (I-1)
R1	    460546.781	[I-5] RPMU of (I-1)
R1	             26 (0.0006%)	[I-6] Total chimeric reads of (I-1)
R1	         6.264	[I-7] RPMH of (I-6)
R1	         6.165	[I-8] PPM of (I-6)
R1	       388.849	[I-9] RPMU of (I-6)
R1		
## -----------------------------------------

R2	        4287682 (100.0000%)	[A] Total raw reads
R2	        4217493 (98.3630%)	[B] Total reads after QC of (A)
R2		
R2	        4217493 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R2	        7722400 (91.5520%)	[B-3] Total mapped reads of (B-2)x2
R2	         712586 (8.4480%)	[B-4] Total unmapped reads of (B-2)x2
R2	        3840942 (91.0717%)	[F] Total mapped reads of (B-2)
R2	         376551 (8.9283%)	[G] Total unmapped reads of (B-2)
R2	          83884 (1.9890%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R2	        4133609 (98.0110%)	[J] Total mapped reads to host genome ( (B-2)-H)
R2	          30571 (0.7249%)	[I-1] Total mapped reads of (H) to exo. genomes
R2	      7395.716	[I-3] RPMH of (I-1)
R2	      7248.619	[I-4] PPM of (I-1)
R2	    364443.756	[I-5] RPMU of (I-1)
R2	             22 (0.0005%)	[I-6] Total chimeric reads of (I-1)
R2	         5.322	[I-7] RPMH of (I-6)
R2	         5.216	[I-8] PPM of (I-6)
R2	       262.267	[I-9] RPMU of (I-6)
R2		
## -----------------------------------------

##=============================================##
# List threshold of RPMU   > 1
# List threshold of P-value < 0.001
# RPMH	PPM	RPMU	Total	Multi_Reads(All_ExoGenus)	Uniq_Reads(This_Genus)	wTotal	Sum_ReadLength	Type	Exo	Genus	Pvalue(Uniq)
7416.7072	7299.1230	460397.2242	30784	0	30784	30784.000	3070925	ALL_R1	viral	Lymphocryptovirus	0.0
<<
7393.2972	7246.2479	364324.5434	30561	0	30561	30561.000	3050256	ALL_R2	viral	Lymphocryptovirus	0.0
<<
6.2641	6.1648	388.8490	26	0	26	26.000	2590	R1U	viral	Lymphocryptovirus	n/a	
<<
5.0803	4.9793	250.3457	21	0	21	21.000	2098	R2U	viral	Lymphocryptovirus	n/a	
0.2419	0.2371	11.9212	1	0	1	1.000	96	R2U	viral	Phix174microvirus	n/a