# 2020/05/07 08:41:03
# HUMAN	Target (Host) organism
# DNA	Sequencing source
# ERR240976	Replication ID
# SRP000540	Sample ID
# ERR240976_1.filt	Read1
# ERR240976_2.filt	Read2
R1	        4063205 (100.0000%)	[A] Total raw reads
R1	        3997030 (98.3714%)	[B] Total reads after QC of (A)
R1		
R1	        3997030 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R1	        7354813 (92.0035%)	[B-3] Total mapped reads of (B-2)x2
R1	         639247 (7.9965%)	[B-4] Total unmapped reads of (B-2)x2
R1	        3698377 (92.5281%)	[F] Total mapped reads of (B-2)
R1	         298653 (7.4719%)	[G] Total unmapped reads of (B-2)
R1	          34243 (0.8567%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R1	        3962787 (99.1433%)	[J] Total mapped reads to host genome ( (B-2)-H)
R1	           2517 (0.0630%)	[I-1] Total mapped reads of (H) to exo. genomes
R1	       635.159	[I-3] RPMH of (I-1)
R1	       629.718	[I-4] PPM of (I-1)
R1	     73504.074	[I-5] RPMU of (I-1)
R1	              3 (0.0001%)	[I-6] Total chimeric reads of (I-1)
R1	         0.757	[I-7] RPMH of (I-6)
R1	         0.751	[I-8] PPM of (I-6)
R1	        87.609	[I-9] RPMU of (I-6)
R1		
## -----------------------------------------

R2	        4063205 (100.0000%)	[A] Total raw reads
R2	        3997030 (98.3714%)	[B] Total reads after QC of (A)
R2		
R2	        3997030 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R2	        7354813 (92.0035%)	[B-3] Total mapped reads of (B-2)x2
R2	         639247 (7.9965%)	[B-4] Total unmapped reads of (B-2)x2
R2	        3656436 (91.4788%)	[F] Total mapped reads of (B-2)
R2	         340594 (8.5212%)	[G] Total unmapped reads of (B-2)
R2	          51374 (1.2853%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R2	        3945656 (98.7147%)	[J] Total mapped reads to host genome ( (B-2)-H)
R2	           2487 (0.0622%)	[I-1] Total mapped reads of (H) to exo. genomes
R2	       630.313	[I-3] RPMH of (I-1)
R2	       622.212	[I-4] PPM of (I-1)
R2	     48409.701	[I-5] RPMU of (I-1)
R2	              3 (0.0001%)	[I-6] Total chimeric reads of (I-1)
R2	         0.760	[I-7] RPMH of (I-6)
R2	         0.751	[I-8] PPM of (I-6)
R2	        58.395	[I-9] RPMU of (I-6)
R2		
## -----------------------------------------

##=============================================##
# List threshold of RPMU   > 1
# List threshold of P-value < 0.001
# RPMH	PPM	RPMU	Total	Multi_Reads(All_ExoGenus)	Uniq_Reads(This_Genus)	wTotal	Sum_ReadLength	Type	Exo	Genus	Pvalue(Uniq)
0.7570	0.7506	87.6091	3	0	3	3.000	298	ALL_R1	bacteria	Sphingomonas	2.77e-04
<<
632.6356	627.2157	73212.0433	2507	0	2507	2507.000	249965	ALL_R1	viral	Lymphocryptovirus	0.0
<<
628.2859	620.2105	48253.9806	2479	0	2479	2479.000	247542	ALL_R2	viral	Lymphocryptovirus	0.0
<<
0.7570	0.7506	87.6091	3	0	3	3.000	300	R1U	viral	Lymphocryptovirus	n/a	
<<
0.7603	0.7506	58.3953	3	0	3	3.000	299	R2U	viral	Lymphocryptovirus	n/a