# 2018/03/04 23:51:59
# HUMAN	Target (Host) organism
# RNA	Sequencing source
# ENCSR429EWK_1	Replication ID
# ENCSR429EWK	Sample ID
# ENCFF150OQH	Read1
# ENCFF460GHU	Read2
R1	  41203759 (100.0000%)	[A] Total raw reads
R1	  39740063 (96.4477%)	[B] Total reads after QC of (A)
R1		
R1	  39740063 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R1	  75886072 (95.4780%)	[B-3] Total mapped reads of (B-2)x2
R1	   3594054 (4.5220%)	[B-4] Total unmapped reads of (B-2)x2
R1	  37989769 (95.5956%)	[F] Total mapped reads of (B-2)
R1	   1750294 (4.4044%)	[G] Total unmapped reads of (B-2)
R1	    419338 (1.0552%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R1	  39320725 (98.9448%)	[J] Total mapped reads to host genome ( (B-2)-H)
R1	    221055 (0.5563%)	[I-1] Total mapped reads of (H) to exo. genomes
R1	      5621.845	[I-3] RPMH of (I-1)
R1	      5562.523	[I-4] PPM of (I-1)
R1	        79 (0.0002%)	[I-5] Total chimeric reads of (I-1)
R1	         2.009	[I-7] RPMH of (I-5)
R1	         1.988	[I-8] PPM of (I-5)
R1		
## -----------------------------------------

R2	  41203759 (100.0000%)	[A] Total raw reads
R2	  39740063 (96.4477%)	[B] Total reads after QC of (A)
R2		
R2	  39740063 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R2	  75886072 (95.4780%)	[B-3] Total mapped reads of (B-2)x2
R2	   3594054 (4.5220%)	[B-4] Total unmapped reads of (B-2)x2
R2	  37896303 (95.3605%)	[F] Total mapped reads of (B-2)
R2	   1843760 (4.6395%)	[G] Total unmapped reads of (B-2)
R2	    428489 (1.0782%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R2	  39311574 (98.9218%)	[J] Total mapped reads to host genome ( (B-2)-H)
R2	    220219 (0.5541%)	[I-1] Total mapped reads of (H) to exo. genomes
R2	      5601.887	[I-3] RPMH of (I-1)
R2	      5541.486	[I-4] PPM of (I-1)
R2	        74 (0.0002%)	[I-5] Total chimeric reads of (I-1)
R2	         1.882	[I-7] RPMH of (I-5)
R2	         1.862	[I-8] PPM of (I-5)
R2		
## -----------------------------------------

##=============================================##
# List threshold of RPMH   > 1
# List threshold of P-value < 0.001
# RPMH	PPM	Total	Multi_Reads(All_ExoGenus)	Uniq_Reads(This_Genus)	wTotal	Sum_ReadLength	Type	Exo	Genus	Pvalue(Uniq)
2612.5322	2584.9647	105370	3073	102297	102726.660	10533012	ALL_R1	bacteria	Bacillus	0.0
881.4469	872.1459	114073	105146	8927	34659.132	11360359	ALL_R1	bacteria	Pseudomonas	0.0
12.0031	11.8764	1304	1029	275	471.970	129999	ALL_R1	bacteria	Cutibacterium	9.55e-40
<<
2611.8136	2583.6523	104842	2438	102404	102674.505	10414840	ALL_R2	bacteria	Bacillus	0.0
914.5052	904.6447	114146	104833	9313	35950.637	11080929	ALL_R2	bacteria	Pseudomonas	0.0
16.5333	16.3551	5203	5120	83	649.952	511939	ALL_R2	bacteria	Escherichia	4.78e-04
11.6030	11.4779	1330	1065	265	456.133	130291	ALL_R2	bacteria	Cutibacterium	4.02e-36
4.0862	4.0421	1633	1510	123	160.633	159536	ALL_R2	bacteria	Acidovorax	2.56e-04
<<
1.0681	1.0569	45	3	42	42.000	4315	R1U	bacteria	Bacillus	n/a	FIP1L1(5);RN7SL2(5);RHOB(4);KMT2C(3);RN7SL1(3)
<<
1.2041	1.1911	49	2	47	47.336	4660	R2U	bacteria	Bacillus	n/a	RN7SL2(5);ST3GAL3(5);POU2F1(4);SLC7A5(3);DIP2B(3)