# 2020/05/02 13:07:37
# HUMAN	Target (Host) organism
# RNA	Sequencing source
# ERR188176	Replication ID
# ERR188176	Sample ID
# ERR188176_1	Read1
# ERR188176_2	Read2
R1	       26453299 (100.0000%)	[A] Total raw reads
R1	       25830482 (97.6456%)	[B] Total reads after QC of (A)
R1		
R1	       25830482 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R1	       47914472 (92.7479%)	[B-3] Total mapped reads of (B-2)x2
R1	        3746492 (7.2521%)	[B-4] Total unmapped reads of (B-2)x2
R1	       24032698 (93.0401%)	[F] Total mapped reads of (B-2)
R1	        1797784 (6.9599%)	[G] Total unmapped reads of (B-2)
R1	         170906 (0.6616%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R1	       25659576 (99.3384%)	[J] Total mapped reads to host genome ( (B-2)-H)
R1	         119424 (0.4623%)	[I-1] Total mapped reads of (H) to exo. genomes
R1	      4654.169	[I-3] RPMH of (I-1)
R1	      4623.375	[I-4] PPM of (I-1)
R1	    698770.084	[I-5] RPMU of (I-1)
R1	            190 (0.0007%)	[I-6] Total chimeric reads of (I-1)
R1	         7.405	[I-7] RPMH of (I-6)
R1	         7.356	[I-8] PPM of (I-6)
R1	      1111.722	[I-9] RPMU of (I-6)
R1		
## -----------------------------------------

R2	       26453299 (100.0000%)	[A] Total raw reads
R2	       25830482 (97.6456%)	[B] Total reads after QC of (A)
R2		
R2	       25830482 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R2	       47914472 (92.7479%)	[B-3] Total mapped reads of (B-2)x2
R2	        3746492 (7.2521%)	[B-4] Total unmapped reads of (B-2)x2
R2	       23881774 (92.4558%)	[F] Total mapped reads of (B-2)
R2	        1948708 (7.5442%)	[G] Total unmapped reads of (B-2)
R2	         240918 (0.9327%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R2	       25589564 (99.0673%)	[J] Total mapped reads to host genome ( (B-2)-H)
R2	         118155 (0.4574%)	[I-1] Total mapped reads of (H) to exo. genomes
R2	      4617.312	[I-3] RPMH of (I-1)
R2	      4574.247	[I-4] PPM of (I-1)
R2	    490436.580	[I-5] RPMU of (I-1)
R2	            224 (0.0009%)	[I-6] Total chimeric reads of (I-1)
R2	         8.754	[I-7] RPMH of (I-6)
R2	         8.672	[I-8] PPM of (I-6)
R2	       929.777	[I-9] RPMU of (I-6)
R2		
## -----------------------------------------

##=============================================##
# List threshold of RPMU   > 1
# List threshold of P-value < 0.001
# RPMH	PPM	RPMU	Total	Multi_Reads(All_ExoGenus)	Uniq_Reads(This_Genus)	wTotal	Sum_ReadLength	Type	Exo	Genus	Pvalue(Uniq)
10.1223	10.0553	1519.7477	336	93	243	259.734	24815	ALL_R1	bacteria	Escherichia	0.0
<<
3020.5877	3000.6022	453506.6060	77507	0	77507	77507.000	5782471	ALL_R1	viral	Lymphocryptovirus	0.0
<<
9.2416	9.1554	981.6120	353	154	199	236.488	25483	ALL_R2	bacteria	Escherichia	1.08e-212
<<
3008.7265	2980.6645	319577.6156	76992	0	76992	76992.000	5713052	ALL_R2	viral	Lymphocryptovirus	0.0
<<
0.0390	0.0387	5.8512	1	0	1	1.000	65	R1U	bacteria	Desulfovibrio	n/a	
<<
0.0390	0.0387	5.8512	1	0	1	1.000	67	R1U	fungi	Pestalotiopsis	n/a	
<<
6.8590	6.8137	1029.8059	176	0	176	176.000	12985	R1U	viral	Lymphocryptovirus	n/a	
<<
0.0782	0.0774	8.3016	2	0	2	2.000	104	R2U	bacteria	Lachnoclostridium	n/a	
0.0391	0.0387	4.1508	1	0	1	1.000	64	R2U	bacteria	Alcanivorax	n/a	
0.0391	0.0387	4.1508	1	0	1	1.000	53	R2U	bacteria	Flammeovirga	n/a	
0.0391	0.0387	4.1508	1	0	1	1.000	45	R2U	bacteria	Neisseria	n/a	
0.0391	0.0387	4.1508	1	0	1	1.000	43	R2U	bacteria	Richelia	n/a	
0.0391	0.0387	4.1508	1	0	1	1.000	36	R2U	bacteria	Petrimonas	n/a	
0.0391	0.0387	4.1508	1	0	1	1.000	36	R2U	bacteria	Citrobacter	n/a	
<<
0.1045	0.1035	11.0951	5	3	2	2.673	257	R2U	fungi	Fusarium	n/a	
0.0952	0.0943	10.1155	5	3	2	2.437	257	R2U	fungi	Aspergillus	n/a	
0.0803	0.0796	8.5340	5	3	2	2.056	327	R2U	fungi	Talaromyces	n/a	
0.0782	0.0774	8.3016	3	1	2	2.000	173	R2U	fungi	Moesziomyces	n/a	
0.0782	0.0774	8.3016	2	0	2	2.000	119	R2U	fungi	Capronia	n/a	
0.0654	0.0648	6.9443	5	4	1	1.673	320	R2U	fungi	Dichomitus	n/a	
0.0632	0.0626	6.7160	3	2	1	1.618	181	R2U	fungi	Batrachochytrium	n/a	
0.0412	0.0408	4.3791	3	2	1	1.055	158	R2U	fungi	Eutypa	n/a	
0.0412	0.0408	4.3791	2	1	1	1.055	97	R2U	fungi	Aureobasidium	n/a	
0.0391	0.0387	4.1508	3	2	1	1.000	205	R2U	fungi	Schizosaccharomyces	n/a	
0.0391	0.0387	4.1508	3	2	1	1.000	196	R2U	fungi	Laccaria	n/a	
0.0391	0.0387	4.1508	3	2	1	1.000	195	R2U	fungi	Clavispora	n/a	
0.0391	0.0387	4.1508	3	2	1	1.000	190	R2U	fungi	Spathaspora	n/a	
0.0391	0.0387	4.1508	3	2	1	1.000	188	R2U	fungi	Lodderomyces	n/a	
0.0391	0.0387	4.1508	2	1	1	1.000	130	R2U	fungi	Pseudocercospora	n/a	
0.0391	0.0387	4.1508	2	1	1	1.000	123	R2U	fungi	Colletotrichum	n/a	
0.0391	0.0387	4.1508	2	1	1	1.000	122	R2U	fungi	Ustilago	n/a	
0.0391	0.0387	4.1508	2	1	1	1.000	118	R2U	fungi	Coccidioides	n/a	
0.0391	0.0387	4.1508	2	1	1	1.000	117	R2U	fungi	Pichia	n/a	
0.0391	0.0387	4.1508	2	1	1	1.000	116	R2U	fungi	Scedosporium	n/a	
0.0391	0.0387	4.1508	2	1	1	1.000	113	R2U	fungi	Histoplasma	n/a	
0.0391	0.0387	4.1508	1	0	1	1.000	74	R2U	fungi	Kwoniella	n/a	
0.0391	0.0387	4.1508	1	0	1	1.000	68	R2U	fungi	Rhinocladiella	n/a	
0.0391	0.0387	4.1508	1	0	1	1.000	44	R2U	fungi	Schizophyllum	n/a	
0.0391	0.0387	4.1508	1	0	1	1.000	40	R2U	fungi	Beauveria	n/a	
0.0391	0.0387	4.1508	1	0	1	1.000	37	R2U	fungi	Malassezia	n/a	
0.0391	0.0387	4.1508	1	0	1	1.000	37	R2U	fungi	Coniophora	n/a	
<<
6.7215	6.6588	713.9359	172	0	172	172.000	12540	R2U	viral	Lymphocryptovirus	n/a