# 2020/05/03 04:05:35
# HUMAN	Target (Host) organism
# DNA	Sequencing source
# ERR245947	Replication ID
# SRP000540	Sample ID
# ERR245947_1.filt	Read1
# ERR245947_2.filt	Read2
R1	        3947063 (100.0000%)	[A] Total raw reads
R1	        3874942 (98.1728%)	[B] Total reads after QC of (A)
R1		
R1	        3874942 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R1	        7134509 (92.0596%)	[B-3] Total mapped reads of (B-2)x2
R1	         615375 (7.9404%)	[B-4] Total unmapped reads of (B-2)x2
R1	        3595484 (92.7881%)	[F] Total mapped reads of (B-2)
R1	         279458 (7.2119%)	[G] Total unmapped reads of (B-2)
R1	          33981 (0.8769%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R1	        3840961 (99.1231%)	[J] Total mapped reads to host genome ( (B-2)-H)
R1	           7503 (0.1936%)	[I-1] Total mapped reads of (H) to exo. genomes
R1	      1953.417	[I-3] RPMH of (I-1)
R1	      1936.287	[I-4] PPM of (I-1)
R1	    220799.859	[I-5] RPMU of (I-1)
R1	              6 (0.0002%)	[I-6] Total chimeric reads of (I-1)
R1	         1.562	[I-7] RPMH of (I-6)
R1	         1.548	[I-8] PPM of (I-6)
R1	       176.569	[I-9] RPMU of (I-6)
R1		
## -----------------------------------------

R2	        3947063 (100.0000%)	[A] Total raw reads
R2	        3874942 (98.1728%)	[B] Total reads after QC of (A)
R2		
R2	        3874942 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R2	        7134509 (92.0596%)	[B-3] Total mapped reads of (B-2)x2
R2	         615375 (7.9404%)	[B-4] Total unmapped reads of (B-2)x2
R2	        3539025 (91.3310%)	[F] Total mapped reads of (B-2)
R2	         335917 (8.6690%)	[G] Total unmapped reads of (B-2)
R2	          54346 (1.4025%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R2	        3820596 (98.5975%)	[J] Total mapped reads to host genome ( (B-2)-H)
R2	           7350 (0.1897%)	[I-1] Total mapped reads of (H) to exo. genomes
R2	      1923.784	[I-3] RPMH of (I-1)
R2	      1896.803	[I-4] PPM of (I-1)
R2	    135244.544	[I-5] RPMU of (I-1)
R2	              3 (0.0001%)	[I-6] Total chimeric reads of (I-1)
R2	         0.785	[I-7] RPMH of (I-6)
R2	         0.774	[I-8] PPM of (I-6)
R2	        55.202	[I-9] RPMU of (I-6)
R2		
## -----------------------------------------

##=============================================##
# List threshold of RPMU   > 1
# List threshold of P-value < 0.001
# RPMH	PPM	RPMU	Total	Multi_Reads(All_ExoGenus)	Uniq_Reads(This_Genus)	wTotal	Sum_ReadLength	Type	Exo	Genus	Pvalue(Uniq)
1953.1570	1936.0290	220770.4305	7502	0	7502	7502.000	748082	ALL_R1	viral	Lymphocryptovirus	0.0
<<
1923.5219	1896.5445	135226.1436	7349	0	7349	7349.000	732024	ALL_R2	viral	Lymphocryptovirus	0.0
<<
1.3018	1.2903	147.1410	5	0	5	5.000	500	R1U	viral	Lymphocryptovirus	n/a	
<<
0.7852	0.7742	55.2019	3	0	3	3.000	299	R2U	viral	Lymphocryptovirus	n/a