# 2020/05/03 07:43:03
# HUMAN	Target (Host) organism
# DNA	Sequencing source
# ERR240924	Replication ID
# SRP000540	Sample ID
# ERR240924_1.filt	Read1
# ERR240924_2.filt	Read2
R1	        3900926 (100.0000%)	[A] Total raw reads
R1	        3839124 (98.4157%)	[B] Total reads after QC of (A)
R1		
R1	        3839124 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R1	        7050026 (91.8182%)	[B-3] Total mapped reads of (B-2)x2
R1	         628222 (8.1818%)	[B-4] Total unmapped reads of (B-2)x2
R1	        3543415 (92.2975%)	[F] Total mapped reads of (B-2)
R1	         295709 (7.7025%)	[G] Total unmapped reads of (B-2)
R1	          34440 (0.8971%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R1	        3804684 (99.1029%)	[J] Total mapped reads to host genome ( (B-2)-H)
R1	           2122 (0.0553%)	[I-1] Total mapped reads of (H) to exo. genomes
R1	       557.734	[I-3] RPMH of (I-1)
R1	       552.730	[I-4] PPM of (I-1)
R1	     61614.402	[I-5] RPMU of (I-1)
R1	              4 (0.0001%)	[I-6] Total chimeric reads of (I-1)
R1	         1.051	[I-7] RPMH of (I-6)
R1	         1.042	[I-8] PPM of (I-6)
R1	       116.144	[I-9] RPMU of (I-6)
R1		
## -----------------------------------------

R2	        3900926 (100.0000%)	[A] Total raw reads
R2	        3839124 (98.4157%)	[B] Total reads after QC of (A)
R2		
R2	        3839124 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R2	        7050026 (91.8182%)	[B-3] Total mapped reads of (B-2)x2
R2	         628222 (8.1818%)	[B-4] Total unmapped reads of (B-2)x2
R2	        3506611 (91.3388%)	[F] Total mapped reads of (B-2)
R2	         332513 (8.6612%)	[G] Total unmapped reads of (B-2)
R2	          49264 (1.2832%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R2	        3789860 (98.7168%)	[J] Total mapped reads to host genome ( (B-2)-H)
R2	           2108 (0.0549%)	[I-1] Total mapped reads of (H) to exo. genomes
R2	       556.221	[I-3] RPMH of (I-1)
R2	       549.084	[I-4] PPM of (I-1)
R2	     42789.867	[I-5] RPMU of (I-1)
R2	              7 (0.0002%)	[I-6] Total chimeric reads of (I-1)
R2	         1.847	[I-7] RPMH of (I-6)
R2	         1.823	[I-8] PPM of (I-6)
R2	       142.092	[I-9] RPMU of (I-6)
R2		
## -----------------------------------------

##=============================================##
# List threshold of RPMU   > 1
# List threshold of P-value < 0.001
# RPMH	PPM	RPMU	Total	Multi_Reads(All_ExoGenus)	Uniq_Reads(This_Genus)	wTotal	Sum_ReadLength	Type	Exo	Genus	Pvalue(Uniq)
556.1566	551.1674	61440.1858	2116	0	2116	2116.000	211193	ALL_R1	viral	Lymphocryptovirus	0.0
<<
1.3193	1.3024	101.4940	5	0	5	5.000	499	ALL_R2	bacteria	Campylobacter	2.97e-04
<<
553.3186	546.2184	42566.5801	2097	0	2097	2097.000	209015	ALL_R2	viral	Lymphocryptovirus	0.0
<<
1.0513	1.0419	116.1440	4	0	4	4.000	400	R1U	viral	Lymphocryptovirus	n/a	
<<
1.5832	1.5629	121.7928	6	0	6	6.000	594	R2U	viral	Lymphocryptovirus	n/a	
0.2639	0.2605	20.2988	1	0	1	1.000	93	R2U	viral	Phix174microvirus	n/a