# 2020/05/02 12:18:02
# HUMAN	Target (Host) organism
# DNA	Sequencing source
# ERR229823	Replication ID
# SRP000540	Sample ID
# ERR229823_1.filt	Read1
# ERR229823_2.filt	Read2
R1	      106937748 (100.0000%)	[A] Total raw reads
R1	      101804428 (95.1997%)	[B] Total reads after QC of (A)
R1		
R1	      101804428 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R1	      188632621 (92.6446%)	[B-3] Total mapped reads of (B-2)x2
R1	       14976235 (7.3554%)	[B-4] Total unmapped reads of (B-2)x2
R1	       94700131 (93.0216%)	[F] Total mapped reads of (B-2)
R1	        7104297 (6.9784%)	[G] Total unmapped reads of (B-2)
R1	         810355 (0.7960%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R1	      100994073 (99.2040%)	[J] Total mapped reads to host genome ( (B-2)-H)
R1	          87026 (0.0855%)	[I-1] Total mapped reads of (H) to exo. genomes
R1	       861.694	[I-3] RPMH of (I-1)
R1	       854.835	[I-4] PPM of (I-1)
R1	    107392.439	[I-5] RPMU of (I-1)
R1	            602 (0.0006%)	[I-6] Total chimeric reads of (I-1)
R1	         5.961	[I-7] RPMH of (I-6)
R1	         5.913	[I-8] PPM of (I-6)
R1	       742.884	[I-9] RPMU of (I-6)
R1		
## -----------------------------------------

R2	      106937748 (100.0000%)	[A] Total raw reads
R2	      101804428 (95.1997%)	[B] Total reads after QC of (A)
R2		
R2	      101804428 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R2	      188632621 (92.6446%)	[B-3] Total mapped reads of (B-2)x2
R2	       14976235 (7.3554%)	[B-4] Total unmapped reads of (B-2)x2
R2	       93932490 (92.2676%)	[F] Total mapped reads of (B-2)
R2	        7871938 (7.7324%)	[G] Total unmapped reads of (B-2)
R2	         979290 (0.9619%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R2	      100825138 (99.0381%)	[J] Total mapped reads to host genome ( (B-2)-H)
R2	          86045 (0.0845%)	[I-1] Total mapped reads of (H) to exo. genomes
R2	       853.408	[I-3] RPMH of (I-1)
R2	       845.199	[I-4] PPM of (I-1)
R2	     87864.678	[I-5] RPMU of (I-1)
R2	            586 (0.0006%)	[I-6] Total chimeric reads of (I-1)
R2	         5.812	[I-7] RPMH of (I-6)
R2	         5.756	[I-8] PPM of (I-6)
R2	       598.393	[I-9] RPMU of (I-6)
R2		
## -----------------------------------------

##=============================================##
# List threshold of RPMU   > 1
# List threshold of P-value < 0.001
# RPMH	PPM	RPMU	Total	Multi_Reads(All_ExoGenus)	Uniq_Reads(This_Genus)	wTotal	Sum_ReadLength	Type	Exo	Genus	Pvalue(Uniq)
858.1791	851.3480	106954.3595	86671	0	86671	86671.000	8470469	ALL_R1	viral	Lymphocryptovirus	0.0
<<
849.3418	841.1717	87446.0068	85635	0	85635	85635.000	7993392	ALL_R2	viral	Lymphocryptovirus	0.0
<<
0.0203	0.0202	2.5322	7	6	1	2.052	700	R1U	bacteria	Campylobacter	n/a	
<<
5.8914	5.8445	734.2461	595	0	595	595.000	57856	R1U	viral	Lymphocryptovirus	n/a	
<<
0.0474	0.0469	4.8801	8	4	4	4.779	666	R2U	bacteria	Campylobacter	n/a	
0.0198	0.0196	2.0423	2	0	2	2.000	115	R2U	bacteria	Alcanivorax	n/a	
0.0198	0.0196	2.0423	2	0	2	2.000	113	R2U	bacteria	Nocardia	n/a	
0.0099	0.0098	1.0211	1	0	1	1.000	40	R2U	bacteria	Flavobacterium	n/a	
0.0099	0.0098	1.0211	1	0	1	1.000	37	R2U	bacteria	Roseivirga	n/a	
<<
0.0099	0.0098	1.0211	1	0	1	1.000	63	R2U	fungi	Mitosporidium	n/a	
0.0099	0.0098	1.0211	1	0	1	1.000	36	R2U	fungi	Trichosporon	n/a	
0.0099	0.0098	1.0211	1	0	1	1.000	36	R2U	fungi	Phycomyces	n/a	
<<
5.6434	5.5891	581.0332	569	0	569	569.000	52302	R2U	viral	Lymphocryptovirus	n/a