# 2020/04/30 11:36:06
# HUMAN	Target (Host) organism
# DNA	Sequencing source
# ERR244572	Replication ID
# SRP000540	Sample ID
# ERR244572_1.filt	Read1
# ERR244572_2.filt	Read2
R1	        1883668 (100.0000%)	[A] Total raw reads
R1	        1849507 (98.1865%)	[B] Total reads after QC of (A)
R1		
R1	        1849507 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R1	        3418947 (92.4286%)	[B-3] Total mapped reads of (B-2)x2
R1	         280067 (7.5714%)	[B-4] Total unmapped reads of (B-2)x2
R1	        1718891 (92.9378%)	[F] Total mapped reads of (B-2)
R1	         130616 (7.0622%)	[G] Total unmapped reads of (B-2)
R1	          14823 (0.8015%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R1	        1834684 (99.1985%)	[J] Total mapped reads to host genome ( (B-2)-H)
R1	           2188 (0.1183%)	[I-1] Total mapped reads of (H) to exo. genomes
R1	      1192.576	[I-3] RPMH of (I-1)
R1	      1183.018	[I-4] PPM of (I-1)
R1	    147608.446	[I-5] RPMU of (I-1)
R1	              5 (0.0003%)	[I-6] Total chimeric reads of (I-1)
R1	         2.725	[I-7] RPMH of (I-6)
R1	         2.703	[I-8] PPM of (I-6)
R1	       337.314	[I-9] RPMU of (I-6)
R1		
## -----------------------------------------

R2	        1883668 (100.0000%)	[A] Total raw reads
R2	        1849507 (98.1865%)	[B] Total reads after QC of (A)
R2		
R2	        1849507 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R2	        3418947 (92.4286%)	[B-3] Total mapped reads of (B-2)x2
R2	         280067 (7.5714%)	[B-4] Total unmapped reads of (B-2)x2
R2	        1700056 (91.9194%)	[F] Total mapped reads of (B-2)
R2	         149451 (8.0806%)	[G] Total unmapped reads of (B-2)
R2	          22026 (1.1909%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R2	        1827481 (98.8091%)	[J] Total mapped reads to host genome ( (B-2)-H)
R2	           2172 (0.1174%)	[I-1] Total mapped reads of (H) to exo. genomes
R2	      1188.521	[I-3] RPMH of (I-1)
R2	      1174.367	[I-4] PPM of (I-1)
R2	     98610.733	[I-5] RPMU of (I-1)
R2	              1 (0.0001%)	[I-6] Total chimeric reads of (I-1)
R2	         0.547	[I-7] RPMH of (I-6)
R2	         0.541	[I-8] PPM of (I-6)
R2	        45.401	[I-9] RPMU of (I-6)
R2		
## -----------------------------------------

##=============================================##
# List threshold of RPMU   > 1
# List threshold of P-value < 0.001
# RPMH	PPM	RPMU	Total	Multi_Reads(All_ExoGenus)	Uniq_Reads(This_Genus)	wTotal	Sum_ReadLength	Type	Exo	Genus	Pvalue(Uniq)
1190.9408	1181.3959	147406.0582	2185	0	2185	2185.000	217846	ALL_R1	viral	Lymphocryptovirus	0.0
<<
1186.8796	1172.7450	98474.5301	2169	0	2169	2169.000	216231	ALL_R2	viral	Lymphocryptovirus	0.0
<<
2.7253	2.7034	337.3136	5	0	5	5.000	500	R1U	viral	Lymphocryptovirus	n/a	
<<
0.5472	0.5407	45.4009	1	0	1	1.000	100	R2U	viral	Lymphocryptovirus	n/a