# 2018/02/23 01:20:57 # HUMAN Target (Host) organism # RNA Sequencing source # ENCSR000CUO_2 Replication ID # ENCSR000CUO Sample ID # ENCFF000GIV Read1 # ENCFF000GIX Read2 R1 110971920 (100.0000%) [A] Total raw reads R1 109444588 (98.6237%) [B] Total reads after QC of (A) R1 R1 109444588 (100.0000%) [B-2] Total reads of (B) passed to HISAT2 R1 204367780 (93.3659%) [B-3] Total mapped reads of (B-2)x2 R1 14521396 (6.6341%) [B-4] Total unmapped reads of (B-2)x2 R1 102277948 (93.4518%) [F] Total mapped reads of (B-2) R1 7166640 (6.5482%) [G] Total unmapped reads of (B-2) R1 3456618 (3.1583%) [H] Total unmapped reads of (B-2) after running BLASTn with (G) R1 105987970 (96.8417%) [J] Total mapped reads to host genome ( (B-2)-H) R1 1197678 (1.0943%) [I-1] Total mapped reads of (H) to exo. genomes R1 11300.131 [I-3] RPMH of (I-1) R1 10943.236 [I-4] PPM of (I-1) R1 293 (0.0003%) [I-5] Total chimeric reads of (I-1) R1 2.764 [I-7] RPMH of (I-5) R1 2.677 [I-8] PPM of (I-5) R1 ## ----------------------------------------- R2 110971920 (100.0000%) [A] Total raw reads R2 109444588 (98.6237%) [B] Total reads after QC of (A) R2 R2 109444588 (100.0000%) [B-2] Total reads of (B) passed to HISAT2 R2 204367780 (93.3659%) [B-3] Total mapped reads of (B-2)x2 R2 14521396 (6.6341%) [B-4] Total unmapped reads of (B-2)x2 R2 102089832 (93.2799%) [F] Total mapped reads of (B-2) R2 7354756 (6.7201%) [G] Total unmapped reads of (B-2) R2 3534727 (3.2297%) [H] Total unmapped reads of (B-2) after running BLASTn with (G) R2 105909861 (96.7703%) [J] Total mapped reads to host genome ( (B-2)-H) R2 1198019 (1.0946%) [I-1] Total mapped reads of (H) to exo. genomes R2 11311.685 [I-3] RPMH of (I-1) R2 10946.352 [I-4] PPM of (I-1) R2 244 (0.0002%) [I-5] Total chimeric reads of (I-1) R2 2.304 [I-7] RPMH of (I-5) R2 2.229 [I-8] PPM of (I-5) R2 ## ----------------------------------------- ##=============================================## # List threshold of RPMH > 1 # List threshold of P-value < 0.001 # RPMH PPM Total Multi_Reads(All_ExoGenus) Uniq_Reads(This_Genus) wTotal Sum_ReadLength Type Exo Genus Pvalue(Uniq) 4244.0687 4110.0271 533138 282294 250844 449820.228 52180153 ALL_R1 bacteria Bosea 0.0 2351.9548 2277.6724 326463 258544 67919 249278.918 31968729 ALL_R1 bacteria Methylobacterium 0.0 927.6814 898.3822 100798 2904 97894 98323.067 10052632 ALL_R1 bacteria Bacillus 0.0 615.0556 595.6301 102696 61131 41565 65188.496 10012627 ALL_R1 bacteria Bradyrhizobium 0.0 125.2474 121.2917 42118 41641 477 13274.719 4096167 ALL_R1 bacteria Rhodopseudomonas 6.31e-04 111.5019 107.9803 36087 35479 608 11817.858 3522812 ALL_R1 bacteria Chelatococcus 6.42e-19 56.8944 55.0975 6755 875 5880 6030.127 677308 ALL_R1 bacteria Staphylococcus 0.0 55.7768 54.0151 21837 21214 623 5911.665 2122603 ALL_R1 bacteria Prosthecomicrobium 1.46e-50 41.0929 39.7951 6151 2573 3578 4355.353 606838 ALL_R1 bacteria Cutibacterium 0.0 39.1555 37.9189 6983 5048 1935 4150.016 658197 ALL_R1 bacteria Escherichia 0.0 37.4496 36.2668 9925 8812 1113 3969.204 966240 ALL_R1 bacteria Variovorax 1.21e-191 35.5972 34.4729 20765 20251 514 3772.871 2005820 ALL_R1 bacteria Sphingomonas 4.72e-11 30.7847 29.8124 7631 6555 1076 3262.809 747639 ALL_R1 bacteria Xenophilus 1.44e-192 26.4641 25.6282 5700 3522 2178 2804.871 539569 ALL_R1 bacteria Corynebacterium 1.71e-116 24.1433 23.3808 6397 5655 742 2558.900 627665 ALL_R1 bacteria Pseudacidovorax 2.02e-299 12.1816 11.7969 5371 4723 648 1291.103 518111 ALL_R1 bacteria Ralstonia 1.03e-45 << 164.7871 159.5826 18048 1238 16810 17465.451 1797782 ALL_R1 fungi Saccharomyces 0.0 << 4211.0103 4075.0075 530592 281305 249287 445987.515 51894367 ALL_R2 bacteria Bosea 0.0 2326.4865 2251.3481 324524 257010 67514 246397.867 31754092 ALL_R2 bacteria Methylobacterium 0.0 945.2594 914.7304 102067 2379 99688 100112.292 10224022 ALL_R2 bacteria Bacillus 0.0 603.8481 584.3456 101080 59590 41490 63953.464 9844255 ALL_R2 bacteria Bradyrhizobium 0.0 108.6279 105.1195 35713 35047 666 11504.764 3481160 ALL_R2 bacteria Chelatococcus 1.00e-31 56.9319 55.0931 6691 798 5893 6029.645 672092 ALL_R2 bacteria Staphylococcus 0.0 55.3365 53.5493 21687 21062 625 5860.685 2106877 ALL_R2 bacteria Prosthecomicrobium 3.65e-51 40.3082 39.0063 5638 2078 3560 4269.032 556044 ALL_R2 bacteria Cutibacterium 0.0 37.5434 36.3309 9726 8574 1152 3976.220 943359 ALL_R2 bacteria Variovorax 1.43e-215 34.5500 33.4341 20207 19634 573 3659.186 1944967 ALL_R2 bacteria Sphingomonas 3.58e-27 30.9496 29.9501 7546 6432 1114 3277.873 737956 ALL_R2 bacteria Xenophilus 1.00e-213 23.3415 22.5876 6227 5548 679 2472.090 608694 ALL_R2 bacteria Pseudacidovorax 1.30e-200 22.6345 21.9035 4719 2547 2172 2397.219 459995 ALL_R2 bacteria Corynebacterium 1.29e-115 12.7323 12.3211 5250 4601 649 1348.477 505657 ALL_R2 bacteria Ralstonia 5.52e-46 6.6517 6.4369 1467 819 648 704.482 143406 ALL_R2 bacteria Geothrix 8.40e-07 << 164.7145 159.3947 18030 1256 16774 17444.890 1806710 ALL_R2 fungi Saccharomyces 0.0 << 1.3234 1.2816 164 87 77 140.260 16252 R1U bacteria Bosea n/a RN7SL2(15);RNR2(15);RN7SL1(14);RNR1(7);PTGR2(6) << 1.0410 1.0074 127 62 65 110.255 12349 R2U bacteria Bosea n/a RNR1(10);RN7SL2(9);RNR2(7);MLF2(4);EIF2AK1(4)