# 2020/04/30 06:11:05
# HUMAN	Target (Host) organism
# DNA	Sequencing source
# ERR242508	Replication ID
# SRP000540	Sample ID
# ERR242508_1.filt	Read1
# ERR242508_2.filt	Read2
R1	        2047936 (100.0000%)	[A] Total raw reads
R1	        2009533 (98.1248%)	[B] Total reads after QC of (A)
R1		
R1	        2009533 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R1	        3694785 (91.9314%)	[B-3] Total mapped reads of (B-2)x2
R1	         324281 (8.0686%)	[B-4] Total unmapped reads of (B-2)x2
R1	        1864092 (92.7624%)	[F] Total mapped reads of (B-2)
R1	         145441 (7.2376%)	[G] Total unmapped reads of (B-2)
R1	          16580 (0.8251%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R1	        1992953 (99.1749%)	[J] Total mapped reads to host genome ( (B-2)-H)
R1	           2410 (0.1199%)	[I-1] Total mapped reads of (H) to exo. genomes
R1	      1209.261	[I-3] RPMH of (I-1)
R1	      1199.284	[I-4] PPM of (I-1)
R1	    145355.850	[I-5] RPMU of (I-1)
R1	              3 (0.0001%)	[I-6] Total chimeric reads of (I-1)
R1	         1.505	[I-7] RPMH of (I-6)
R1	         1.493	[I-8] PPM of (I-6)
R1	       180.941	[I-9] RPMU of (I-6)
R1		
## -----------------------------------------

R2	        2047936 (100.0000%)	[A] Total raw reads
R2	        2009533 (98.1248%)	[B] Total reads after QC of (A)
R2		
R2	        2009533 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R2	        3694785 (91.9314%)	[B-3] Total mapped reads of (B-2)x2
R2	         324281 (8.0686%)	[B-4] Total unmapped reads of (B-2)x2
R2	        1830693 (91.1004%)	[F] Total mapped reads of (B-2)
R2	         178840 (8.8996%)	[G] Total unmapped reads of (B-2)
R2	          30072 (1.4965%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R2	        1979461 (98.5035%)	[J] Total mapped reads to host genome ( (B-2)-H)
R2	           2350 (0.1169%)	[I-1] Total mapped reads of (H) to exo. genomes
R2	      1187.192	[I-3] RPMH of (I-1)
R2	      1169.426	[I-4] PPM of (I-1)
R2	     78145.783	[I-5] RPMU of (I-1)
R2	              0 (0.0000%)	[I-6] Total chimeric reads of (I-1)
R2	         0.000	[I-7] RPMH of (I-6)
R2	         0.000	[I-8] PPM of (I-6)
R2	         0.000	[I-9] RPMU of (I-6)
R2		
## -----------------------------------------

##=============================================##
# List threshold of RPMU   > 1
# List threshold of P-value < 0.001
# RPMH	PPM	RPMU	Total	Multi_Reads(All_ExoGenus)	Uniq_Reads(This_Genus)	wTotal	Sum_ReadLength	Type	Exo	Genus	Pvalue(Uniq)
1207.7555	1197.7907	145174.9095	2407	0	2407	2407.000	239961	ALL_R1	viral	Lymphocryptovirus	0.0
<<
1185.1711	1167.4354	78012.7694	2346	0	2346	2346.000	233799	ALL_R2	viral	Lymphocryptovirus	0.0
<<
1.5053	1.4929	180.9409	3	0	3	3.000	299	R1U	viral	Lymphocryptovirus	n/a