# 2020/04/30 05:49:07
# HUMAN	Target (Host) organism
# DNA	Sequencing source
# ERR242468	Replication ID
# SRP000540	Sample ID
# ERR242468_1.filt	Read1
# ERR242468_2.filt	Read2
R1	        2063634 (100.0000%)	[A] Total raw reads
R1	        2025320 (98.1434%)	[B] Total reads after QC of (A)
R1		
R1	        2025320 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R1	        3723178 (91.9158%)	[B-3] Total mapped reads of (B-2)x2
R1	         327462 (8.0842%)	[B-4] Total unmapped reads of (B-2)x2
R1	        1878828 (92.7670%)	[F] Total mapped reads of (B-2)
R1	         146492 (7.2330%)	[G] Total unmapped reads of (B-2)
R1	          16460 (0.8127%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R1	        2008860 (99.1873%)	[J] Total mapped reads to host genome ( (B-2)-H)
R1	           2435 (0.1202%)	[I-1] Total mapped reads of (H) to exo. genomes
R1	      1212.130	[I-3] RPMH of (I-1)
R1	      1202.279	[I-4] PPM of (I-1)
R1	    147934.386	[I-5] RPMU of (I-1)
R1	              3 (0.0001%)	[I-6] Total chimeric reads of (I-1)
R1	         1.493	[I-7] RPMH of (I-6)
R1	         1.481	[I-8] PPM of (I-6)
R1	       182.260	[I-9] RPMU of (I-6)
R1		
## -----------------------------------------

R2	        2063634 (100.0000%)	[A] Total raw reads
R2	        2025320 (98.1434%)	[B] Total reads after QC of (A)
R2		
R2	        2025320 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R2	        3723178 (91.9158%)	[B-3] Total mapped reads of (B-2)x2
R2	         327462 (8.0842%)	[B-4] Total unmapped reads of (B-2)x2
R2	        1844350 (91.0646%)	[F] Total mapped reads of (B-2)
R2	         180970 (8.9354%)	[G] Total unmapped reads of (B-2)
R2	          30312 (1.4967%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R2	        1995008 (98.5033%)	[J] Total mapped reads to host genome ( (B-2)-H)
R2	           2375 (0.1173%)	[I-1] Total mapped reads of (H) to exo. genomes
R2	      1190.471	[I-3] RPMH of (I-1)
R2	      1172.654	[I-4] PPM of (I-1)
R2	     78351.808	[I-5] RPMU of (I-1)
R2	              5 (0.0002%)	[I-6] Total chimeric reads of (I-1)
R2	         2.506	[I-7] RPMH of (I-6)
R2	         2.469	[I-8] PPM of (I-6)
R2	       164.951	[I-9] RPMU of (I-6)
R2		
## -----------------------------------------

##=============================================##
# List threshold of RPMU   > 1
# List threshold of P-value < 0.001
# RPMH	PPM	RPMU	Total	Multi_Reads(All_ExoGenus)	Uniq_Reads(This_Genus)	wTotal	Sum_ReadLength	Type	Exo	Genus	Pvalue(Uniq)
1212.1303	1202.2791	147934.3864	2435	0	2435	2435.000	242664	ALL_R1	viral	Lymphocryptovirus	0.0
<<
1188.9677	1171.1730	78252.8372	2372	0	2372	2372.000	236184	ALL_R2	viral	Lymphocryptovirus	0.0
<<
1.4934	1.4812	182.2600	3	0	3	3.000	299	R1U	viral	Lymphocryptovirus	n/a	
<<
1.5038	1.4812	98.9707	3	0	3	3.000	299	R2U	viral	Lymphocryptovirus	n/a